RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 CCT8L1PA6NM43 557 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 FLOT1O75955 427 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 ZCCHC18P0CG32 403 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 KRT2P35908 639 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 AMPD3Q01432 767 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 DYNC1I2Q13409 638 aaKnown RBP12.9□□□□□ -0.34
PTPN1-201ENST00000371621 TMC4Q7Z404 712 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 CALML4Q96GE6 196 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 RGL1Q9NZL6 768 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 ASIC3Q9UHC3 531 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 UNC13BO14795 1591 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 SPDYE3A6NKU9 549 aa12.9□□□□□ -0.35
PTPN1-201ENST00000371621 DNAJC6O75061 913 aa12.9□□□□□ -0.35
PTPN1-201ENST00000371621 FGAP02671 866 aa12.9□□□□□ -0.35
PTPN1-201ENST00000371621 UBTFL6P0CB48 400 aaPredicted RBP12.9□□□□□ -0.35
PTPN1-201ENST00000371621 FERP16591 822 aa12.9□□□□□ -0.35
PTPN1-201ENST00000371621 IGBP1P78318 339 aa12.9□□□□□ -0.35
PTPN1-201ENST00000371621 USP49Q70CQ1 688 aa12.9□□□□□ -0.35
PTPN1-201ENST00000371621 LRRC8CQ8TDW0 803 aa12.9□□□□□ -0.35
PTPN1-201ENST00000371621 ZNF483Q8TF39 744 aaPredicted RBP12.9□□□□□ -0.35
PTPN1-201ENST00000371621 PTPN22Q9Y2R2 807 aa12.9□□□□□ -0.35
PTPN1-201ENST00000371621 PCDHA13Q9Y5I0 950 aa12.9□□□□□ -0.35
PTPN1-201ENST00000371621 ZMYM6O95789 1325 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 PPP6R2O75170 966 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 NR1I3Q14994 352 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 DTHD1Q6ZMT9 781 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 ANKRD13DQ6ZTN6 518 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 BZW1Q7L1Q6 419 aaKnown RBP12.89□□□□□ -0.35
PTPN1-201ENST00000371621 ZNF594Q96JF6 807 aaPredicted RBP12.89□□□□□ -0.35
PTPN1-201ENST00000371621 TBC1D7Q9P0N9 293 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 KIF11P52732 1056 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 GBP7Q8N8V2 638 aaPredicted RBP12.89□□□□□ -0.35
PTPN1-201ENST00000371621 TSEN2Q8NCE0 465 aaKnown RBP12.89□□□□□ -0.35
PTPN1-201ENST00000371621 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.89□□□□□ -0.352e-8■■■■■ 38
PTPN1-201ENST00000371621 NAF1Q96HR8 494 aaKnown RBP12.89□□□□□ -0.35
PTPN1-201ENST00000371621 PAIP2BQ9ULR5 123 aaKnown RBP12.89□□□□□ -0.35
PTPN1-201ENST00000371621 ACEP12821 1306 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 TRPM1Q7Z4N2 1603 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 ARHGAP42A6NI28 874 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 H7C1D1 291 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 GPAA1O43292 621 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 CIB2O75838 187 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 TRPM8Q7Z2W7 1104 aa12.89□□□□□ -0.35
PTPN1-201ENST00000371621 DBNLQ9UJU6 430 aaKnown RBP12.89□□□□□ -0.35
PTPN1-201ENST00000371621 ERVK-24P63145 666 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 PSMD6Q15008 389 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 LRRC36Q1X8D7 754 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 DCAF17Q5H9S7 520 aaPredicted RBP12.88□□□□□ -0.35
PTPN1-201ENST00000371621 CCDC62Q6P9F0 684 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 PPP1R14CQ8TAE6 165 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 HIC2Q96JB3 615 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 PRMT1Q99873 361 aaKnown RBP12.88□□□□□ -0.35
PTPN1-201ENST00000371621 LACRTQ9GZZ8 138 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 HOMER2Q9NSB8 354 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 MAP3K19Q56UN5 1328 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 PDE6CP51160 858 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 ANKRD20A8PQ5CZ79 823 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 TTC38Q5R3I4 469 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 DZIP3Q86Y13 1208 aaKnown RBP12.88□□□□□ -0.35
PTPN1-201ENST00000371621 MAP7D3Q8IWC1 876 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 HIPK4Q8NE63 616 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 AGAP11Q8TF27 550 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 TAF1DQ9H5J8 278 aaPredicted RBP12.88□□□□□ -0.35
PTPN1-201ENST00000371621 PLCB1Q9NQ66 1216 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 ZFYVE9O95405 1425 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 KCNA3P22001 575 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 SEPT2Q15019 361 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 TCP11X2Q5H9J9 407 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 GSTA5Q7RTV2 222 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 PIP4K2CQ8TBX8 421 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 FMO2Q99518 471 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 AGPAT5Q9NUQ2 364 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 ADAMTS1Q9UHI8 967 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 TSKSQ9UJT2 592 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 SNX12Q9UMY4 172 aa12.88□□□□□ -0.35
PTPN1-201ENST00000371621 KCNQ3O43525 872 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 CCND1P24385 295 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 POLR2FP61218 127 aaKnown RBP12.87□□□□□ -0.35
PTPN1-201ENST00000371621 PTGDRQ13258 359 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 RAPGEF5Q92565 580 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 GSDMAQ96QA5 445 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 HELLSQ9NRZ9 838 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 C2CD2Q9Y426 696 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 MROH7-TTC4A0A0A0MT08 1334 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 KIAA0232Q92628 1395 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 WDR91A4D1P6 747 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 DAPK3O43293 454 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 TRPA1O75762 1119 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 BMP15O95972 392 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 CTDSPL2Q05D32 466 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 SFMBT2Q5VUG0 894 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 PHLDB2Q86SQ0 1253 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 MIGA1Q8NAN2 632 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 TEX13AQ9BXU3 409 aaPredicted RBP12.87□□□□□ -0.35
PTPN1-201ENST00000371621 IQCGQ9H095 443 aaKnown RBP12.87□□□□□ -0.35
PTPN1-201ENST00000371621 LARSQ9P2J5 1176 aaKnown RBP12.87□□□□□ -0.35
PTPN1-201ENST00000371621 NPATQ14207 1427 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 CFAP73A6NFT4 308 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 PALMO75781 387 aa12.87□□□□□ -0.35
PTPN1-201ENST00000371621 ZNF189O75820 626 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms