RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.23□□□□□ -0.45
CLRN3-201ENST00000368671 ASB14A6NK59 587 aa12.23□□□□□ -0.45
CLRN3-201ENST00000368671 PTGS1P23219 599 aa12.23□□□□□ -0.45
CLRN3-201ENST00000368671 CDK7P50613 346 aa12.23□□□□□ -0.45
CLRN3-201ENST00000368671 RRP1P56182 461 aaKnown RBP12.23□□□□□ -0.45
CLRN3-201ENST00000368671 RRP12Q5JTH9 1297 aaKnown RBP12.23□□□□□ -0.45
CLRN3-201ENST00000368671 MFSD5Q6N075 450 aa12.23□□□□□ -0.45
CLRN3-201ENST00000368671 NSMFQ6X4W1 530 aa12.23□□□□□ -0.45
CLRN3-201ENST00000368671 EEPD1Q7L9B9 569 aa12.23□□□□□ -0.45
CLRN3-201ENST00000368671 TLK2Q86UE8 772 aa12.23□□□□□ -0.45
CLRN3-201ENST00000368671 EVI5LQ96CN4 794 aa12.23□□□□□ -0.45
CLRN3-201ENST00000368671 CCPG1Q9ULG6 757 aa12.23□□□□□ -0.45
CLRN3-201ENST00000368671 ASTN1O14525 1302 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 CTAGE5O15320 804 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 PLA2G6O60733 806 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 CSF2RAP15509 400 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 DNAJB2P25686 324 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 SLC16A2P36021 539 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 PPIGQ13427 754 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLRN3-201ENST00000368671 TTBK2Q6IQ55 1244 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 CXCL17Q6UXB2 119 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 FBXO16Q8IX29 292 aaPredicted RBP12.22□□□□□ -0.45
CLRN3-201ENST00000368671 FAM126BQ8IXS8 530 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 TMEM199Q8N511 208 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 MARVELD3Q96A59 401 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 PURBQ96QR8 312 aaKnown RBP12.22□□□□□ -0.45
CLRN3-201ENST00000368671 CRBNQ96SW2 442 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 AP5M1Q9H0R1 490 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 PDGFCQ9NRA1 345 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 HELLSQ9NRZ9 838 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 CYP39A1Q9NYL5 469 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 ANAPC4Q9UJX5 808 aa12.22□□□□□ -0.45
CLRN3-201ENST00000368671 COL6A3P12111 3177 aa12.21□□□□□ -0.45
CLRN3-201ENST00000368671 FRMPD2Q68DX3 1309 aaPredicted RBP12.21□□□□□ -0.45
CLRN3-201ENST00000368671 DNAH12Q6ZR08 3092 aa12.21□□□□□ -0.45
CLRN3-201ENST00000368671 TMEM265A0A087WTH1 108 aa12.21□□□□□ -0.45
CLRN3-201ENST00000368671 DYNC1LI2O43237 492 aaPredicted RBP12.21□□□□□ -0.45
CLRN3-201ENST00000368671 ACRP10323 421 aa12.21□□□□□ -0.45
CLRN3-201ENST00000368671 SMPD1P17405 629 aa12.21□□□□□ -0.45
CLRN3-201ENST00000368671 DCAF4Q8WV16 495 aa12.21□□□□□ -0.45
CLRN3-201ENST00000368671 FAM227BQ96M60 508 aa12.21□□□□□ -0.45
CLRN3-201ENST00000368671 GPCPD1Q9NPB8 672 aa12.21□□□□□ -0.45
CLRN3-201ENST00000368671 GNEQ9Y223 722 aaKnown RBP12.21□□□□□ -0.45
CLRN3-201ENST00000368671 PCDHGA4Q9Y5G9 962 aa12.21□□□□□ -0.45
CLRN3-201ENST00000368671 A0A0D9SFI3 127 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 GRXCR1A8MXD5 290 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 ORC4O43929 436 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 ZEB2O60315 1214 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 ICAM1P05362 532 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 CYP2C18P33260 490 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 PDE1AP54750 535 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 EMP3P54852 163 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 NKX3-2P78367 333 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 ITGA7Q13683 1181 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 GRIN2CQ14957 1233 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 FSCN1Q16658 493 aaKnown RBP12.2□□□□□ -0.46
CLRN3-201ENST00000368671 MCMDC2Q4G0Z9 681 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 TMEM240Q5SV17 173 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 TMEM63BQ5T3F8 832 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 SYDE2Q5VT97 1194 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 KIAA1211Q6ZU35 1233 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 C16orf59Q7L2K0 433 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 TIFAQ96CG3 184 aa12.2□□□□□ -0.46
CLRN3-201ENST00000368671 RANBP17Q9H2T7 1088 aaKnown RBP12.2□□□□□ -0.46
CLRN3-201ENST00000368671 GBF1Q92538 1859 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 UMODL1Q5DID0 1318 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 TRIM6-TRIM34B2RNG4 842 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 CABYRO75952 493 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 CD4P01730 458 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 FGAP02671 866 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 TOP1P11387 765 aaKnown RBP12.19□□□□□ -0.46
CLRN3-201ENST00000368671 PBX2P40425 430 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 NOVP48745 357 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 ALDH5A1P51649 535 aaPredicted RBP12.19□□□□□ -0.46
CLRN3-201ENST00000368671 HAND2P61296 217 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 PSMC6P62333 389 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 NMIQ13287 307 aaPredicted RBP12.19□□□□□ -0.46
CLRN3-201ENST00000368671 BAATQ14032 418 aaPredicted RBP12.19□□□□□ -0.46
CLRN3-201ENST00000368671 ALX1Q15699 326 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 ARSIQ5FYB1 569 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 IQSEC1Q6DN90 963 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 TAPT1Q6NXT6 567 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 PSRC1Q6PGN9 363 aaPredicted RBP12.19□□□□□ -0.46
CLRN3-201ENST00000368671 ZNF365Q70YC5 407 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 OXER1Q8TDS5 423 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 TMEM47Q9BQJ4 181 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 HIPK3Q9H422 1215 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 ZNF576Q9H609 170 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 VTA1Q9NP79 307 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 TSHZ2Q9NRE2 1034 aa12.19□□□□□ -0.46
CLRN3-201ENST00000368671 PTPDC1A2A3K4 754 aa12.18□□□□□ -0.46
CLRN3-201ENST00000368671 NFIBO00712 420 aa12.18□□□□□ -0.46
CLRN3-201ENST00000368671 FGRP09769 529 aa12.18□□□□□ -0.46
CLRN3-201ENST00000368671 HSPD1P10809 573 aaKnown RBP12.18□□□□□ -0.46
CLRN3-201ENST00000368671 CALML3P27482 149 aa12.18□□□□□ -0.46
CLRN3-201ENST00000368671 CCL23P55773 120 aa12.18□□□□□ -0.46
CLRN3-201ENST00000368671 SLC30A10Q6XR72 485 aa12.18□□□□□ -0.46
CLRN3-201ENST00000368671 ZNF589Q86UQ0 364 aaPredicted RBP12.18□□□□□ -0.46
CLRN3-201ENST00000368671 SLC43A3Q8NBI5 491 aa12.18□□□□□ -0.46
CLRN3-201ENST00000368671 RILPL2Q969X0 211 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms