RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 CCDC151A5D8V7 595 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 LARGE1O95461 756 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 CTNNA1P35221 906 aaKnown RBP9.88□□□□□ -0.83
SYNE1-205ENST00000367251 BTDP43251 543 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 RASSF2P50749 326 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 ORC2Q13416 577 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-205ENST00000367251 PPP2R5DQ14738 602 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 MIER3Q7Z3K6 550 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 ANKFY1Q9P2R3 1169 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 CDHR2Q9BYE9 1310 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 hCG_1642624A0A1W2PR95 340 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 POLR2MP0CAP2 368 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 LMNTD2Q8IXW0 634 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 RPUSD2Q8IZ73 545 aaKnown RBP9.88□□□□□ -0.83
SYNE1-205ENST00000367251 LARP4BQ92615 738 aaKnown RBP9.88□□□□□ -0.83
SYNE1-205ENST00000367251 BRIP1Q9BX63 1249 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 CAPS2Q9BXY5 557 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 NLRC4Q9NPP4 1024 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 NRBP1Q9UHY1 535 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 KRIT1O00522 736 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 IGSF3O75054 1194 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 DMTNQ08495 405 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 RBL2Q08999 1139 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 TOB2Q14106 344 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-205ENST00000367251 KRT71Q3SY84 523 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 SLFNL1Q499Z3 407 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 C4orf50Q6ZRC1 276 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 NLRP10Q86W26 655 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 FAM114A2Q9NRY5 505 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 TMEM94Q12767 1356 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 P4HA1P13674 534 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 EPHB4P54760 987 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 ADAM9Q13443 819 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 PLCB4Q15147 1175 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 AOC3Q16853 763 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 FBXO11Q86XK2 927 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 PARD3BQ8TEW8 1205 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 TEKT3Q9BXF9 490 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 TBC1D7Q9P0N9 293 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 IQSEC2Q5JU85 1478 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 E7EVH7 732 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 RNF40O75150 1001 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 HHATQ5VTY9 493 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 PPP1R21Q6ZMI0 780 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 STAG1Q8WVM7 1258 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 CALR3Q96L12 384 aaKnown RBP9.87□□□□□ -0.83
SYNE1-205ENST00000367251 TTLL3Q9Y4R7 772 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 RGS16O15492 202 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-205ENST00000367251 ZBED6P86452 979 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 MAPK8IP2Q13387 824 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-205ENST00000367251 ZNF827Q17R98 1081 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 MIS12Q9H081 205 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 TTC36A6NLP5 189 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 KCNK3O14649 394 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 CRKLP46109 303 aaKnown RBP9.87□□□□□ -0.83
SYNE1-205ENST00000367251 GNGT1P63211 74 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 ALX1Q15699 326 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 AS3MTQ9HBK9 375 aa9.87□□□□□ -0.83
SYNE1-205ENST00000367251 MYCLP12524 364 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 HSPA6P17066 643 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 PLA2G4DQ86XP0 818 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 TPH2Q8IWU9 490 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 TRIM11Q96F44 468 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 PAGR1Q9BTK6 254 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 PUS7LQ9H0K6 701 aaKnown RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 PPME1Q9Y570 386 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 TACC3Q9Y6A5 838 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 LOC102724428A0A0B4J2F2 783 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 CCNE1P24864 410 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 PHBP35232 272 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 SIK1P57059 783 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 CDC37Q16543 378 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 DCUN1D2Q6PH85 259 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 PPP4R3CPQ6ZMV5 832 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 CMTR1Q8N1G2 835 aaKnown RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 CFBP00751 764 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 RNASE9P60153 205 aaKnown RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 POLR2FP61218 127 aaKnown RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 IRX5P78411 483 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 SLC35F6Q8N357 371 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 AFAP1L2Q8N4X5 818 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 PBKQ96KB5 322 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 OSBPL5Q9H0X9 879 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 LARSQ9P2J5 1176 aaKnown RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 PTPRUQ92729 1446 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 EIF3CLB5ME19 914 aaKnown RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 OATP04181 439 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 HSPA2P54652 639 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 BPIFB4P59827 614 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 ITIH3Q06033 890 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 TSNAXIP1Q2TAA8 658 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 GNPTABQ3T906 1256 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 ABI1Q8IZP0 508 aa9.86□□□□□ -0.83
SYNE1-205ENST00000367251 GPKOWQ92917 476 aaPredicted RBP eCLIP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 RAB3IPQ96QF0 476 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 EIF3CQ99613 913 aaKnown RBP9.86□□□□□ -0.83
SYNE1-205ENST00000367251 XPAP23025 273 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-205ENST00000367251 TNFAIP1Q13829 316 aa9.85□□□□□ -0.83
SYNE1-205ENST00000367251 USH1GQ495M9 461 aa9.85□□□□□ -0.83
SYNE1-205ENST00000367251 CCDC62Q6P9F0 684 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms