RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SMPD1P17405 629 aa21.42■■□□□ 1.02
CLN3-202ENST00000355477 CST5P28325 142 aaPredicted RBP21.42■■□□□ 1.02
CLN3-202ENST00000355477 BMP8BP34820 402 aa21.42■■□□□ 1.02
CLN3-202ENST00000355477 SART3Q15020 963 aaKnown RBP21.42■■□□□ 1.02
CLN3-202ENST00000355477 C1orf53Q5VUE5 145 aa21.42■■□□□ 1.02
CLN3-202ENST00000355477 FBXO11Q86XK2 927 aa21.42■■□□□ 1.02
CLN3-202ENST00000355477 RGS22Q8NE09 1264 aa21.42■■□□□ 1.02
CLN3-202ENST00000355477 MTMR8Q96EF0 704 aa21.42■■□□□ 1.02
CLN3-202ENST00000355477 GNEQ9Y223 722 aaKnown RBP21.42■■□□□ 1.02
CLN3-202ENST00000355477 PPP1R11O60927 126 aaPredicted RBP21.41■■□□□ 1.02
CLN3-202ENST00000355477 MDM2Q00987 491 aaPredicted RBP21.41■■□□□ 1.02
CLN3-202ENST00000355477 GNASQ5JWF2 1037 aa21.41■■□□□ 1.02
CLN3-202ENST00000355477 IQSEC1Q6DN90 963 aa21.41■■□□□ 1.02
CLN3-202ENST00000355477 NOL8Q76FK4 1167 aaKnown RBP21.41■■□□□ 1.02
CLN3-202ENST00000355477 LY9Q9HBG7 655 aa21.41■■□□□ 1.02
CLN3-202ENST00000355477 VTA1Q9NP79 307 aa21.41■■□□□ 1.02
CLN3-202ENST00000355477 KIAA1217Q5T5P2 1943 aa21.4■■□□□ 1.02
CLN3-202ENST00000355477 MOXD2PA6NHM9 499 aa21.4■■□□□ 1.02
CLN3-202ENST00000355477 PRC1O43663 620 aa21.4■■□□□ 1.02
CLN3-202ENST00000355477 ASGR1P07306 291 aa21.4■■□□□ 1.02
CLN3-202ENST00000355477 NKX3-2P78367 333 aa21.4■■□□□ 1.02
CLN3-202ENST00000355477 BEX3Q00994 111 aa21.4■■□□□ 1.02
CLN3-202ENST00000355477 TLE2Q04725 743 aa21.4■■□□□ 1.02
CLN3-202ENST00000355477 SPC25Q9HBM1 224 aa21.4■■□□□ 1.02
CLN3-202ENST00000355477 LOC102724159A0A0B4J2E5 919 aa21.39■■□□□ 1.01
CLN3-202ENST00000355477 CYTH3O43739 400 aa21.39■■□□□ 1.01
CLN3-202ENST00000355477 CDC45O75419 566 aa21.39■■□□□ 1.01
CLN3-202ENST00000355477 PWP2Q15269 919 aaKnown RBP21.39■■□□□ 1.01
CLN3-202ENST00000355477 SH3RF1Q7Z6J0 888 aa21.39■■□□□ 1.01
CLN3-202ENST00000355477 PCSK9Q8NBP7 692 aaKnown RBP21.39■■□□□ 1.01
CLN3-202ENST00000355477 DNERQ8NFT8 737 aa21.39■■□□□ 1.01
CLN3-202ENST00000355477 SYTL5Q8TDW5 730 aaPredicted RBP21.39■■□□□ 1.01
CLN3-202ENST00000355477 NUP133Q8WUM0 1156 aa21.39■■□□□ 1.01
CLN3-202ENST00000355477 RIOX1Q9H6W3 641 aa21.39■■□□□ 1.01
CLN3-202ENST00000355477 COL20A1Q9P218 1284 aa21.39■■□□□ 1.01
CLN3-202ENST00000355477 MRPL11Q9Y3B7 192 aaKnown RBP21.39■■□□□ 1.01
CLN3-202ENST00000355477 LAMA2P24043 3122 aaKnown RBP21.38■■□□□ 1.01
CLN3-202ENST00000355477 A0A1W2PPC1 479 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 OPLAHO14841 1288 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 ZBTB5O15062 677 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 DYNC1LI2O43237 492 aaPredicted RBP21.38■■□□□ 1.01
CLN3-202ENST00000355477 EDNRBP24530 442 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 MCM5P33992 734 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 CASC1Q6TDU7 716 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 CATIPQ7Z7H3 387 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 TLK2Q86UE8 772 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 TAAR1Q96RJ0 339 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 PIGSQ96S52 555 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 MYL10Q9BUA6 226 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 AMNQ9BXJ7 453 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 STARD7Q9NQZ5 370 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 PDLIM7Q9NR12 457 aa21.38■■□□□ 1.01
CLN3-202ENST00000355477 RBM47A0AV96 593 aaKnown RBP21.37■■□□□ 1.01
CLN3-202ENST00000355477 TRIM43BA6NCK2 446 aa21.37■■□□□ 1.01
CLN3-202ENST00000355477 PDE4DQ08499 809 aa21.37■■□□□ 1.01
CLN3-202ENST00000355477 HOMER1Q86YM7 354 aa21.37■■□□□ 1.01
CLN3-202ENST00000355477 ZNF654Q8IZM8 581 aa21.37■■□□□ 1.01
CLN3-202ENST00000355477 TRIM43Q96BQ3 446 aaPredicted RBP21.37■■□□□ 1.01
CLN3-202ENST00000355477 MTA3Q9BTC8 594 aa21.37■■□□□ 1.01
CLN3-202ENST00000355477 WDR11Q9BZH6 1224 aa21.37■■□□□ 1.01
CLN3-202ENST00000355477 UBE2OQ9C0C9 1292 aaKnown RBP21.37■■□□□ 1.01
CLN3-202ENST00000355477 MAF1Q9H063 256 aa21.37■■□□□ 1.01
CLN3-202ENST00000355477 PRDM5Q9NQX1 630 aaPredicted RBP21.37■■□□□ 1.01
CLN3-202ENST00000355477 SH2B2O14492 632 aaPredicted RBP21.36■■□□□ 1.01
CLN3-202ENST00000355477 PQBP1O60828 265 aaKnown RBP21.36■■□□□ 1.01
CLN3-202ENST00000355477 FSCN1Q16658 493 aaKnown RBP21.36■■□□□ 1.01
CLN3-202ENST00000355477 DUSP28Q4G0W2 176 aa21.36■■□□□ 1.01
CLN3-202ENST00000355477 MCF2L2Q86YR7 1114 aa21.36■■□□□ 1.01
CLN3-202ENST00000355477 TMEM87BQ96K49 555 aa21.36■■□□□ 1.01
CLN3-202ENST00000355477 GLT1D1Q96MS3 346 aa21.36■■□□□ 1.01
CLN3-202ENST00000355477 LRRC2Q9BYS8 371 aa21.36■■□□□ 1.01
CLN3-202ENST00000355477 AP5M1Q9H0R1 490 aa21.36■■□□□ 1.01
CLN3-202ENST00000355477 PRKAG2Q9UGJ0 569 aa21.36■■□□□ 1.01
CLN3-202ENST00000355477 Q9Y3F1 56 aa21.36■■□□□ 1.01
CLN3-202ENST00000355477 PCDHA1Q9Y5I3 950 aa21.36■■□□□ 1.01
CLN3-202ENST00000355477 MYH7BA7E2Y1 1941 aa21.35■■□□□ 1.01
CLN3-202ENST00000355477 ELP1O95163 1332 aa21.35■■□□□ 1.01
CLN3-202ENST00000355477 CFBP00751 764 aa21.35■■□□□ 1.01
CLN3-202ENST00000355477 NEFLP07196 543 aa21.35■■□□□ 1.01
CLN3-202ENST00000355477 CDK7P50613 346 aa21.35■■□□□ 1.01
CLN3-202ENST00000355477 RASEFQ8IZ41 740 aa21.35■■□□□ 1.01
CLN3-202ENST00000355477 VTI1AQ96AJ9 217 aa21.35■■□□□ 1.01
CLN3-202ENST00000355477 LBHD1Q9BQE6 289 aaPredicted RBP21.35■■□□□ 1.01
CLN3-202ENST00000355477 SOX1O00570 391 aaPredicted RBP21.34■■□□□ 1.01
CLN3-202ENST00000355477 ITGB8P26012 769 aa21.34■■□□□ 1.01
CLN3-202ENST00000355477 FAAP100Q0VG06 881 aa21.34■■□□□ 1.01
CLN3-202ENST00000355477 CXCL17Q6UXB2 119 aa21.34■■□□□ 1.01
CLN3-202ENST00000355477 ANKRD33Q7Z3H0 272 aa21.34■■□□□ 1.01
CLN3-202ENST00000355477 TMTC2Q8N394 836 aa21.34■■□□□ 1.01
CLN3-202ENST00000355477 PIBF1Q8WXW3 757 aa21.34■■□□□ 1.01
CLN3-202ENST00000355477 RMDN3Q96TC7 470 aa21.34■■□□□ 1.01
CLN3-202ENST00000355477 MPHOSPH6Q99547 160 aaKnown RBP21.34■■□□□ 1.01
CLN3-202ENST00000355477 MAP3K14Q99558 947 aa21.34■■□□□ 1.01
CLN3-202ENST00000355477 PNMA6FA0A0J9YX94 578 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 DDAH1O94760 285 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 CLTBP09497 229 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 RXRAP19793 462 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 LIFRP42702 1097 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 HSD17B4P51659 736 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 RNF20Q5VTR2 975 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms