RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 FAM133AQ8N9E0 248 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 RETREG2Q8NC44 543 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 GDPD5Q8WTR4 605 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 PPP1R13LQ8WUF5 828 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 FAM212AQ96EL1 285 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 REV3LO60673 3130 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 TMEM232C9JQI7 657 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 PI4K2BG5E9Z4 385 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 CHMP4BP1P59074 171 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 CSPP1Q1MSJ5 1256 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 SLFN13Q68D06 897 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 IQSEC1Q6DN90 963 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 KIAA1211Q6ZU35 1233 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 TRERF1Q96PN7 1200 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 ZBED2Q9BTP6 218 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 CD320Q9NPF0 282 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 GPHNQ9NQX3 736 aaPredicted RBP13.33□□□□□ -0.28
RTN3-204ENST00000354497 MTUS1Q9ULD2 1270 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 ZBED9Q6R2W3 1325 aa13.33□□□□□ -0.28
RTN3-204ENST00000354497 PRDM1O75626 825 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 BMP3P12645 472 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 RFC2P35250 354 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 KCNJ6P48051 423 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 MRE11P49959 708 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 SNAP25P60880 206 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 ZNF444Q8N0Y2 327 aaPredicted RBP13.32□□□□□ -0.28
RTN3-204ENST00000354497 PHOSPHO2Q8TCD6 241 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 KIF1BPQ96EK5 621 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 POLR3EQ9NVU0 708 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 NOD1Q9Y239 953 aa13.32□□□□□ -0.28
RTN3-204ENST00000354497 COL4A4P53420 1690 aaPredicted RBP13.31□□□□□ -0.28
RTN3-204ENST00000354497 PRR33A8MZF0 331 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 RLBP1P12271 317 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 UBE3CQ15386 1083 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 ZSCAN25Q6NSZ9 544 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 TAPT1Q6NXT6 567 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 NSMFQ6X4W1 530 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 OR6J1Q8NGC5 347 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 CEP95Q96GE4 821 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 PUS7LQ9H0K6 701 aaKnown RBP13.31□□□□□ -0.28
RTN3-204ENST00000354497 Q9Y3F1 56 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 NCOR1O75376 2440 aa13.31□□□□□ -0.28
RTN3-204ENST00000354497 PRRC2BQ5JSZ5 2229 aaKnown RBP13.3□□□□□ -0.28
RTN3-204ENST00000354497 LCHNA4D1U4 455 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 STAT2P52630 851 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 PDE4CQ08493 712 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 TMCO2Q7Z6W1 182 aaPredicted RBP13.3□□□□□ -0.28
RTN3-204ENST00000354497 GJD3Q8N144 294 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 PHF12Q96QT6 1004 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 MTG1Q9BT17 334 aaPredicted RBP13.3□□□□□ -0.28
RTN3-204ENST00000354497 UBE2ZQ9H832 354 aaPredicted RBP13.3□□□□□ -0.28
RTN3-204ENST00000354497 VTA1Q9NP79 307 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 ZNF536O15090 1300 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 GREB1LQ9C091 1923 aaPredicted RBP13.3□□□□□ -0.28
RTN3-204ENST00000354497 LPXNO60711 386 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 TTLL1O95922 423 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 IQCF3P0C7M6 154 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 FDX1P10109 184 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 KCNA5P22460 613 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 TDO2P48775 406 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 CPT1AP50416 773 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 PURAQ00577 322 aaKnown RBP13.3□□□□□ -0.28
RTN3-204ENST00000354497 NBPF20Q3BBV1 942 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 TKFCQ3LXA3 575 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 MUM1L1Q5H9M0 696 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 GMCL1P1Q8NEA9 526 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 PURBQ96QR8 312 aaKnown RBP13.3□□□□□ -0.28
RTN3-204ENST00000354497 CRBNQ96SW2 442 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 HAUS7Q99871 368 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 WDR11Q9BZH6 1224 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 MTMR7Q9Y216 660 aa13.3□□□□□ -0.28
RTN3-204ENST00000354497 SCN5AQ14524 2016 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 IGKV6D-41A0A0C4DH26 115 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 PDIA4P13667 645 aaKnown RBP13.29□□□□□ -0.28
RTN3-204ENST00000354497 ATP5JP18859 108 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 SLC1A4P43007 532 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 BFSP2Q13515 415 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 DUSP28Q4G0W2 176 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 SBK1Q52WX2 424 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 FAM160B2Q86V87 743 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 CHURC1Q8WUH1 139 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 ZNF287Q9HBT7 754 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 MTMR4Q9NYA4 1195 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 CYP39A1Q9NYL5 469 aa13.29□□□□□ -0.28
RTN3-204ENST00000354497 BAIAP3O94812 1187 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 APPP05067 770 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 TSPY3P0CV98 308 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 TSPY8P0CW00 308 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 IL9P15248 144 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 BRDTQ58F21 947 aaPredicted RBP13.28□□□□□ -0.28
RTN3-204ENST00000354497 KCTD1Q719H9 257 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 FAM178BQ8IXR5 827 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 RPAP2Q8IXW5 612 aaPredicted RBP13.28□□□□□ -0.28
RTN3-204ENST00000354497 STAG1Q8WVM7 1258 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 MKL1Q969V6 931 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 STRBPQ96SI9 672 aaKnown RBP13.28□□□□□ -0.28
RTN3-204ENST00000354497 CCPG1Q9ULG6 757 aa13.28□□□□□ -0.28
RTN3-204ENST00000354497 MYH4Q9Y623 1939 aa13.27□□□□□ -0.28
RTN3-204ENST00000354497 GSG1L2A8MUP6 293 aa13.27□□□□□ -0.29
RTN3-204ENST00000354497 RRP9O43818 475 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms