RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TCHHQ07283 1943 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 GCOM1H8Y6P7 765 aaPredicted RBP10.51□□□□□ -0.73
USP4-202ENST00000351842 CHMP2AO43633 222 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 ICAM1P05362 532 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 POLR2MP0CAP2 368 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 ZBTB48P10074 688 aaPredicted RBP10.51□□□□□ -0.73
USP4-202ENST00000351842 ERVK-9P63128 1117 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 ERVK-24P63145 666 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 FSTL1Q12841 308 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 MOGSQ13724 837 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 PRR16Q569H4 304 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 ANO1Q5XXA6 986 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 IFNL1Q8IU54 200 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 PDILTQ8N807 584 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 TAAR1Q96RJ0 339 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 PHF20Q9BVI0 1012 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 ZMYND15Q9H091 742 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 CEP290O15078 2479 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 BAG4O95429 457 aaKnown RBP10.51□□□□□ -0.73
USP4-202ENST00000351842 CYP2B6P20813 491 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 GSE1Q14687 1217 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 SPATA32Q96LK8 384 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 RMDN3Q96TC7 470 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 BEGAINQ9BUH8 593 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 RANBP17Q9H2T7 1088 aaKnown RBP10.51□□□□□ -0.73
USP4-202ENST00000351842 CREBZFQ9NS37 354 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 COL20A1Q9P218 1284 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 PCDHA6Q9UN73 950 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 PCDHA8Q9Y5H6 950 aa10.51□□□□□ -0.73
USP4-202ENST00000351842 OPLAHO14841 1288 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 RCAN1P53805 252 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 RESTQ13127 1097 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 NOGQ13253 232 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 KCTD2Q14681 263 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 MYSM1Q5VVJ2 828 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 DPP9Q86TI2 863 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 GPRC5AQ8NFJ5 357 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 IL31RAQ8NI17 732 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 CLIC6Q96NY7 704 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 PARK7Q99497 189 aaKnown RBP10.5□□□□□ -0.73
USP4-202ENST00000351842 A1CFQ9NQ94 594 aaKnown RBP10.5□□□□□ -0.73
USP4-202ENST00000351842 MRPL11Q9Y3B7 192 aaKnown RBP10.5□□□□□ -0.73
USP4-202ENST00000351842 MANSC4A6NHS7 340 aaPredicted RBP10.5□□□□□ -0.73
USP4-202ENST00000351842 FAM155AB1AL88 458 aaPredicted RBP10.5□□□□□ -0.73
USP4-202ENST00000351842 GADD45BO75293 160 aaPredicted RBP10.5□□□□□ -0.73
USP4-202ENST00000351842 ARHGEF16Q5VV41 709 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 BICD2Q8TD16 824 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 MAP3K14Q99558 947 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 RBM27Q9P2N5 1060 aaKnown RBP10.5□□□□□ -0.73
USP4-202ENST00000351842 TULP1O00294 542 aaPredicted RBP10.5□□□□□ -0.73
USP4-202ENST00000351842 DHX8Q14562 1220 aaKnown RBP10.5□□□□□ -0.73
USP4-202ENST00000351842 NPY5RQ15761 445 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 LBX2Q6XYB7 198 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 ANO3Q9BYT9 981 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 GINM1Q9NU53 330 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 STK36Q9NRP7 1315 aa10.5□□□□□ -0.73
USP4-202ENST00000351842 TXKP42681 527 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 KRT85P78386 507 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 NONOQ15233 471 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP4-202ENST00000351842 GLIPR1L2Q4G1C9 344 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 SH3D19Q5HYK7 790 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 BTNL9Q6UXG8 535 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 SEPT14Q6ZU15 432 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 C12orf42Q96LP6 360 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 ACAD9Q9H845 621 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 VWA3AA6NCI4 1184 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 POTEB2H3BUK9 544 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 MEIS2O14770 477 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 TNPO2O14787 897 aaKnown RBP10.49□□□□□ -0.73
USP4-202ENST00000351842 C1QTNF8P60827 252 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 SREBF2Q12772 1141 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 PPP1R13LQ8WUF5 828 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 GBP4Q96PP9 640 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 ZMYND12Q9H0C1 365 aa10.49□□□□□ -0.73
USP4-202ENST00000351842 NT5C2P49902 561 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 GRIN1Q05586 938 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 TTC38Q5R3I4 469 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 MMP19Q99542 508 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 TOB1P50616 345 aaPredicted RBP10.48□□□□□ -0.73
USP4-202ENST00000351842 PTGDRQ13258 359 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 POTEDQ86YR6 584 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 ERCC4Q92889 916 aaPredicted RBP10.48□□□□□ -0.73
USP4-202ENST00000351842 ZFYVE28Q9HCC9 887 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 NOL7Q9UMY1 257 aaKnown RBP10.48□□□□□ -0.73
USP4-202ENST00000351842 ATP6V1DQ9Y5K8 247 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 PAPPA2Q9BXP8 1791 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 HOXA7P31268 230 aaPredicted RBP10.48□□□□□ -0.73
USP4-202ENST00000351842 PRAMEF19Q5SWL8 479 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 GJC2Q5T442 439 aaPredicted RBP10.48□□□□□ -0.73
USP4-202ENST00000351842 CLEC4DQ8WXI8 215 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 RIC8AQ9NPQ8 531 aa10.48□□□□□ -0.73
USP4-202ENST00000351842 PP2D1A8MPX8 630 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 GOLGA6L22H0YM25 854 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 SLC37A4O43826 429 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 FCER1AP12319 257 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 ADORA2AP29274 412 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 DDIT3P35638 169 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 ARHGAP4P98171 946 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 SYTL5Q8TDW5 730 aaPredicted RBP10.47□□□□□ -0.73
USP4-202ENST00000351842 TMEM60Q9H2L4 133 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms