RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 DCDC2CA8MYV0 355 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 NQO1P15559 274 aaKnown RBP11.76□□□□□ -0.53
CAPN3-203ENST00000349748 MDM2Q00987 491 aaPredicted RBP11.76□□□□□ -0.53
CAPN3-203ENST00000349748 SFMBT2Q5VUG0 894 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 P3H4Q92791 437 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 IQCGQ9H095 443 aaKnown RBP11.76□□□□□ -0.53
CAPN3-203ENST00000349748 TAF1DQ9H5J8 278 aaPredicted RBP11.76□□□□□ -0.53
CAPN3-203ENST00000349748 DLGAP2Q9P1A6 1054 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 IGSF1Q8N6C5 1336 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 A0A0G2JLW4 131 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 HIP1O00291 1037 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 HSPA1LP34931 641 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 POSTNQ15063 836 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 CDC37Q16543 378 aaPredicted RBP11.76□□□□□ -0.53
CAPN3-203ENST00000349748 KCTD19Q17RG1 926 aaPredicted RBP11.76□□□□□ -0.53
CAPN3-203ENST00000349748 FOXB2Q5VYV0 432 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 TSPAN18Q96SJ8 248 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 SNRKQ9NRH2 765 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 NDUFB9Q9Y6M9 179 aa11.76□□□□□ -0.53
CAPN3-203ENST00000349748 LRRC37A3O60309 1634 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 IGF2BP3O00425 579 aaKnown RBP eCLIP11.75□□□□□ -0.53
CAPN3-203ENST00000349748 SP100P23497 879 aaPredicted RBP11.75□□□□□ -0.53
CAPN3-203ENST00000349748 MORC3Q14149 939 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 ZRSR2Q15696 482 aaKnown RBP11.75□□□□□ -0.53
CAPN3-203ENST00000349748 Q4G0T1 1027 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 PABPC1LQ4VXU2 614 aaKnown RBP11.75□□□□□ -0.53
CAPN3-203ENST00000349748 RESP18Q5W5W9 173 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 C8orf74Q6P047 294 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 SMYD4Q8IYR2 804 aaPredicted RBP11.75□□□□□ -0.53
CAPN3-203ENST00000349748 ARFGAP2Q8N6H7 521 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 TEX9Q8N6V9 391 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 CCDC197Q8NCU1 140 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 MDM1Q8TC05 714 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 VPS16Q9H269 839 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 TMBIM4Q9HC24 238 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 ADAM22Q9P0K1 906 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 CRYBG1Q9Y4K1 1723 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 hCG_2014768A0A024R1R8 64 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 KRT16P08779 473 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 ZNF24P17028 368 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 PLCD1P51178 756 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 SFSWAPQ12872 951 aaKnown RBP11.75□□□□□ -0.53
CAPN3-203ENST00000349748 SETDB1Q15047 1291 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 NDNQ99608 321 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 EPB41L5Q9HCM4 733 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 ABCF2Q9UG63 623 aa11.75□□□□□ -0.53
CAPN3-203ENST00000349748 ROBO1Q9Y6N7 1651 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 PXDNQ92626 1479 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 MBD4O95243 580 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 CD44P16070 742 aaKnown RBP11.74□□□□□ -0.53
CAPN3-203ENST00000349748 KIF23Q02241 960 aaPredicted RBP11.74□□□□□ -0.53
CAPN3-203ENST00000349748 GUCY2DQ02846 1103 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 TEFQ10587 303 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 USPL1Q5W0Q7 1092 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 NFRKBQ6P4R8 1299 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 DHX32Q7L7V1 743 aaKnown RBP11.74□□□□□ -0.53
CAPN3-203ENST00000349748 SLC17A8Q8NDX2 589 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 DYDC1Q8WWB3 177 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 KIFAP3Q92845 792 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 FGD4Q96M96 766 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 RBM12Q9NTZ6 932 aaKnown RBP11.74□□□□□ -0.53
CAPN3-203ENST00000349748 ABCF3Q9NUQ8 709 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 CFAP73A6NFT4 308 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 MYL6BP14649 208 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 MRPS35P82673 323 aaKnown RBP11.74□□□□□ -0.53
CAPN3-203ENST00000349748 CD302Q8IX05 232 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 TMTC2Q8N394 836 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 OPTNQ96CV9 577 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 DTNBP1Q96EV8 351 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 DACH1Q9UI36 760 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 SNX12Q9UMY4 172 aa11.74□□□□□ -0.53
CAPN3-203ENST00000349748 N4BP2Q86UW6 1770 aaPredicted RBP11.74□□□□□ -0.53
CAPN3-203ENST00000349748 GNAT3A8MTJ3 354 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 GCOM1H8Y6P7 765 aaPredicted RBP11.73□□□□□ -0.53
CAPN3-203ENST00000349748 MYZAPP0CAP1 466 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 BPIFB4P59827 614 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 CYP27A1Q02318 531 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 CCDC15Q0P6D6 951 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 DYNC1I2Q13409 638 aaKnown RBP11.73□□□□□ -0.53
CAPN3-203ENST00000349748 AIFM3Q96NN9 605 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 NKX1-2Q9UD57 310 aaPredicted RBP11.73□□□□□ -0.53
CAPN3-203ENST00000349748 SERTAD1Q9UHV2 236 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 SH3TC1Q8TE82 1336 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 POLR2DO15514 142 aaKnown RBP11.73□□□□□ -0.53
CAPN3-203ENST00000349748 CASP1P29466 404 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 GRIN1Q05586 938 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 SLC39A6Q13433 755 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 LMNTD2Q8IXW0 634 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 MIPOL1Q8TD10 442 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 EAF2Q96CJ1 260 aaPredicted RBP11.73□□□□□ -0.53
CAPN3-203ENST00000349748 RANBP17Q9H2T7 1088 aaKnown RBP11.73□□□□□ -0.53
CAPN3-203ENST00000349748 BZW2Q9Y6E2 419 aaKnown RBP11.73□□□□□ -0.53
CAPN3-203ENST00000349748 ORC4O43929 436 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 GSTA1P08263 222 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 HMGB1P09429 215 aaKnown RBP11.73□□□□□ -0.53
CAPN3-203ENST00000349748 EVA1CP58658 441 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 NCALDP61601 193 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 PTPAQ15257 358 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 CCDC38Q502W7 563 aa11.73□□□□□ -0.53
CAPN3-203ENST00000349748 SPATA1Q5VX52 437 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms