RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 CNOT6LQ96LI5 555 aaKnown RBP10.74□□□□□ -0.69
HOXA1-201ENST00000343060 CCDC43Q96MW1 224 aaKnown RBP10.74□□□□□ -0.69
HOXA1-201ENST00000343060 JPH2Q9BR39 696 aaPredicted RBP10.74□□□□□ -0.69
HOXA1-201ENST00000343060 TLR10Q9BXR5 811 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 ACTR5Q9H9F9 607 aaPredicted RBP10.74□□□□□ -0.69
HOXA1-201ENST00000343060 KLC4Q9NSK0 619 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 RBM12Q9NTZ6 932 aaKnown RBP10.74□□□□□ -0.69
HOXA1-201ENST00000343060 KBTBD4Q9NVX7 518 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 ARHGAP20Q9P2F6 1191 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 SUFUQ9UMX1 484 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 BICDL2A1A5D9 508 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 KRT14P02533 472 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 PPP1R2P41236 205 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 PAFAH1B1P43034 410 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 ATP1A2P50993 1020 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 KIF11P52732 1056 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 ITGB3BPQ13352 177 aaPredicted RBP10.74□□□□□ -0.69
HOXA1-201ENST00000343060 CCDC40Q4G0X9 1142 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 KRT26Q7Z3Y9 468 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 EIF1ADQ8N9N8 165 aaKnown RBP10.74□□□□□ -0.69
HOXA1-201ENST00000343060 CCT8L2Q96SF2 557 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 MAGEF1Q9HAY2 307 aa10.74□□□□□ -0.69
HOXA1-201ENST00000343060 SHANK3Q9BYB0 1731 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 PCDH11XQ9BZA7 1347 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 PCDH11YQ9BZA8 1340 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 PES1O00541 588 aaKnown RBP10.73□□□□□ -0.69
HOXA1-201ENST00000343060 CLGNO14967 610 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 PLEKP08567 350 aaPredicted RBP10.73□□□□□ -0.69
HOXA1-201ENST00000343060 HDLBPQ00341 1268 aaKnown RBP10.73□□□□□ -0.69
HOXA1-201ENST00000343060 GUCY1A3Q02108 690 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 NKX1-1Q15270 411 aaPredicted RBP10.73□□□□□ -0.69
HOXA1-201ENST00000343060 CCDC181Q5TID7 509 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 CATIPQ7Z7H3 387 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 CSGALNACT2Q8N6G5 542 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 WHAMMQ8TF30 809 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.73□□□□□ -0.69
HOXA1-201ENST00000343060 P2RX5Q93086 422 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 ZSCAN10Q96SZ4 725 aaPredicted RBP10.73□□□□□ -0.69
HOXA1-201ENST00000343060 SIK3Q9Y2K2 1263 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 MYH1P12882 1939 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 MROH5Q6ZUA9 1318 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 GLI1P08151 1106 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 FGRP09769 529 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 MYBP10242 640 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 ELF1P32519 619 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 MCM7P33993 719 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 HSPA9P38646 679 aaKnown RBP10.73□□□□□ -0.69
HOXA1-201ENST00000343060 KCTD16Q68DU8 428 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 LRIG3Q6UXM1 1119 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 PIK3AP1Q6ZUJ8 805 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 RNF10Q8N5U6 811 aaKnown RBP10.73□□□□□ -0.69
HOXA1-201ENST00000343060 HINFPQ9BQA5 517 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 CCSER1Q9C0I3 900 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 CD248Q9HCU0 757 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 SLC40A1Q9NP59 571 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 SMARCAL1Q9NZC9 954 aa10.73□□□□□ -0.69
HOXA1-201ENST00000343060 hCG_1642624A0A1W2PR95 340 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 GRID2IPA4D2P6 1211 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 FAM153BP0C7A2 387 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 CSB-PGBD3P0DP91 1061 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 CARSP49589 748 aaKnown RBP10.72□□□□□ -0.69
HOXA1-201ENST00000343060 MRPL12P52815 198 aaKnown RBP10.72□□□□□ -0.69
HOXA1-201ENST00000343060 ASTE1Q2TB18 679 aaPredicted RBP10.72□□□□□ -0.69
HOXA1-201ENST00000343060 FAM153CQ494X1 144 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 KLHDC7AQ5VTJ3 777 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 NLRP10Q86W26 655 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 CUEDC2Q9H467 287 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 EHD2Q9NZN4 543 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 FAM153AQ9UHL3 310 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 ABCB11O95342 1321 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 C5orf60A6NFR6 353 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 RBAK-RBAKDNI3L0D1 243 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 PCP11498 1178 aaKnown RBP10.72□□□□□ -0.69
HOXA1-201ENST00000343060 SLC5A1P13866 664 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 MRPS25P82663 173 aaKnown RBP10.72□□□□□ -0.69
HOXA1-201ENST00000343060 CFAP221Q4G0U5 840 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 FKBP15Q5T1M5 1219 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 IFIT1BQ5T764 474 aaKnown RBP10.72□□□□□ -0.69
HOXA1-201ENST00000343060 GIGYF2Q6Y7W6 1299 aaKnown RBP10.72□□□□□ -0.69
HOXA1-201ENST00000343060 KIF6Q6ZMV9 814 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 TAX1BP1Q86VP1 789 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 SYNE4Q8N205 404 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 GIMAP7Q8NHV1 300 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 CYFIP2Q96F07 1278 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 TMBIM4Q9HC24 238 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 PLCB1Q9NQ66 1216 aa10.72□□□□□ -0.69
HOXA1-201ENST00000343060 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.71□□□□□ -0.69
HOXA1-201ENST00000343060 TOGARAM1Q9Y4F4 1720 aa10.71□□□□□ -0.69
HOXA1-201ENST00000343060 BHMG1C9JSJ3 638 aaPredicted RBP10.71□□□□□ -0.69
HOXA1-201ENST00000343060 HEXIM1O94992 359 aaKnown RBP10.71□□□□□ -0.69
HOXA1-201ENST00000343060 SCG2P13521 617 aa10.71□□□□□ -0.69
HOXA1-201ENST00000343060 RDXP35241 583 aaKnown RBP10.71□□□□□ -0.69
HOXA1-201ENST00000343060 EIF4A3P38919 411 aaKnown RBP10.71□□□□□ -0.69
HOXA1-201ENST00000343060 MATR3P43243 847 aaKnown RBP eCLIP10.71□□□□□ -0.69
HOXA1-201ENST00000343060 PFKFB3Q16875 520 aaPredicted RBP10.71□□□□□ -0.69
HOXA1-201ENST00000343060 TYW1BQ6NUM6 668 aa10.71□□□□□ -0.69
HOXA1-201ENST00000343060 ARHGAP27Q6ZUM4 889 aa10.71□□□□□ -0.69
HOXA1-201ENST00000343060 CCDC50Q8IVM0 306 aa10.71□□□□□ -0.69
HOXA1-201ENST00000343060 ARFGAP2Q8N6H7 521 aa10.71□□□□□ -0.69
HOXA1-201ENST00000343060 NOC4LQ9BVI4 516 aaKnown RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms