RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 UCMAQ8WVF2 138 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 MEIS3Q99687 375 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 RCAN1P53805 252 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 EVCP57679 992 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 ZNF653Q96CK0 615 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 GPR101Q96P66 508 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 UTP6Q9NYH9 597 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CIDEBQ9UHD4 219 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 NEK10Q6ZWH5 1172 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 OR2W6PQ8NHA6 318 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 TOGARAM1Q9Y4F4 1720 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 IFI16Q16666 785 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 DPH5Q9H2P9 285 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CNOT10Q9H9A5 744 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PARP2Q9UGN5 583 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CFAP73A6NFT4 308 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 FOXD2O60548 495 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 TACC1O75410 805 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 METTL24Q5JXM2 366 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 ITFG2Q969R8 447 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 SHCBP1LQ9BZQ2 653 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 TRIM4Q9C037 500 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CHCHD3Q9NX63 227 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CLIC4Q9Y696 253 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 XRN1Q8IZH2 1706 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CAPN15O75808 1086 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 STX1AQ16623 288 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 TEX19Q8NA77 164 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PHKBQ93100 1093 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 JAKMIP2Q96AA8 810 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 DDX50Q9BQ39 737 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PAGR1Q9BTK6 254 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 NLRC4Q9NPP4 1024 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 SCINQ9Y6U3 715 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 NLRP1Q9C000 1473 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CTAGE9A4FU28 777 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 MIER3Q7Z3K6 550 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC148Q8NFR7 591 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 FAM76AQ8TAV0 307 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 NEK1Q96PY6 1258 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PANX2Q96RD6 677 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 DDX25Q9UHL0 483 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 GOLGA8IPA6NC78 632 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 GOLGA8JA6NMD2 632 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 RIMBP2O15034 1052 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CATIPQ7Z7H3 387 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 GSDMBQ8TAX9 411 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 RFX7Q2KHR2 1363 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 VWDEQ8N2E2 1590 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PIAS1O75925 651 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 LMNAP02545 664 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 SH3TC2Q8TF17 1288 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CRACR2AQ9BSW2 395 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 TSGA10Q9BZW7 698 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 DDX21Q9NR30 783 aaKnown RBP eCLIP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 LTN1O94822 1766 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC12Q8WUD4 166 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 TPP2P29144 1249 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 SLC9A5Q14940 896 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 HSP90AA5PQ58FG0 334 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 SPZ1Q9BXG8 430 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 LUC7L2Q9Y383 392 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 DNAJC6O75061 913 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 FERP16591 822 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 NBPF14Q5TI25 921 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 LMTK2Q8IWU2 1503 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 TRPM3Q9HCF6 1732 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 SYNCQ9H7C4 482 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 PAIP2BQ9ULR5 123 aaKnown RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CACNB1Q02641 598 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-201ENST00000341594 ARMC5Q96C12 935 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 CYP46A1Q9Y6A2 500 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 FOCADQ5VW36 1801 aa3.89□□□□□ -1.79
SYNE1-201ENST00000341594 UBE4BO95155 1302 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 EMBQ6PCB8 327 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 H2AFXP16104 143 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 STMN1P16949 149 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ARIH1Q9Y4X5 557 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ZC3H11AO75152 810 aaKnown RBP eCLIP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 IDH1O75874 414 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TMOD1P28289 359 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 EPC2Q52LR7 807 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 DTX3LQ8TDB6 740 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 EIF3BP55884 814 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TRIM33Q9UPN9 1127 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ZSCAN22P10073 491 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CMPK2Q5EBM0 449 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 EPSTI1Q96J88 318 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CDK17Q00537 523 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 RASEFQ8IZ41 740 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 VCXQ9H320 206 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ARAP2Q8WZ64 1704 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 MCM7P33993 719 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 IRGQQ8WZA9 623 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 LGR6Q9HBX8 967 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ASAP1Q9ULH1 1129 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CYP2D7A0A087X1C5 515 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 MXRA7P84157 204 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 HDLBPQ00341 1268 aaKnown RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms