RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CCAR2Q8N163 923 aaKnown RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 MRPL9Q9BYD2 267 aaKnown RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 SLC32A1Q9H598 525 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 TRPC7Q9HCX4 862 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 PTPN23Q9H3S7 1636 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 APBA1Q02410 837 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 APBA2Q99767 749 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 DDX50Q9BQ39 737 aaKnown RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 SH3BP1Q9Y3L3 701 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 TIAM1Q13009 1591 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 MADDQ8WXG6 1647 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.34□□□□□ -0.915e-6■■■■□ 21.7
HMGB1-203ENST00000341423 INHAP05111 366 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 SDHBP21912 280 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 CCL23P55773 120 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 CCDC102BQ68D86 513 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 APPBP2Q92624 585 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 KIF12Q96FN5 646 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 PA2G4Q9UQ80 394 aaKnown RBP9.34□□□□□ -0.91
HMGB1-203ENST00000341423 FAN1Q9Y2M0 1017 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 IL16Q14005 1332 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 KLF18A0A0U1RQI7 1052 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 GPR182O15218 404 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 NKRFO15226 690 aaKnown RBP eCLIP9.34□□□□□ -0.911e-9■□□□□ 9.2
HMGB1-203ENST00000341423 CYP2C19P33261 490 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 PPM1AP35813 382 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 ZNF827Q17R98 1081 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 FSIP1Q8NA03 581 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 SCFD1Q8WVM8 642 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 SPACA7Q96KW9 195 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 SEZ6LQ9BYH1 1024 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 HIPK3Q9H422 1215 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 DNM3Q9UQ16 869 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 TNNQ9UQP3 1299 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 PDIA4P13667 645 aaKnown RBP9.34□□□□□ -0.91
HMGB1-203ENST00000341423 ADCYAP1R1P41586 468 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 OR1G1P47890 313 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 NFKBIBQ15653 356 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 FAM83BQ5T0W9 1011 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 TPH2Q8IWU9 490 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 CELF1Q92879 486 aaKnown RBP9.34□□□□□ -0.91
HMGB1-203ENST00000341423 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.34□□□□□ -0.912e-6■■■■□ 20
HMGB1-203ENST00000341423 ABCC4O15439 1325 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 HEXIM1O94992 359 aaKnown RBP9.34□□□□□ -0.91
HMGB1-203ENST00000341423 PRR29P0C7W0 189 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 TNNI1P19237 187 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 PRELPP51888 382 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 MYO1EQ12965 1108 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 ANO6Q4KMQ2 910 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 ASPRV1Q53RT3 343 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 SGO2Q562F6 1265 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 ANKRD23Q86SG2 305 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 MRPS31Q92665 395 aaKnown RBP9.34□□□□□ -0.91
HMGB1-203ENST00000341423 MIS12Q9H081 205 aa9.34□□□□□ -0.91
HMGB1-203ENST00000341423 C2CD2LO14523 706 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 PFDN6O15212 129 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 CYP2C9P11712 490 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 PRR23CQ6ZRP0 262 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 HMG20BQ9P0W2 317 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 SPTLC1O15269 473 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 MCAMP43121 646 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 DAB2P98082 770 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 PTPN12Q05209 780 aaKnown RBP9.33□□□□□ -0.92
HMGB1-203ENST00000341423 UBXN2BQ14CS0 331 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 LARP1BQ659C4 914 aaKnown RBP9.33□□□□□ -0.92
HMGB1-203ENST00000341423 FOXR1Q6PIV2 292 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 CCDC65Q8IXS2 484 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 KIAA1524Q8TCG1 905 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 NCAPGQ9BPX3 1015 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 PNPLA7Q6ZV29 1317 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 ABCD1P33897 745 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 ELAVL2Q12926 359 aaKnown RBP9.33□□□□□ -0.92
HMGB1-203ENST00000341423 DMP1Q13316 513 aaPredicted RBP9.33□□□□□ -0.92
HMGB1-203ENST00000341423 LAMC2Q13753 1193 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 UAP1L1Q3KQV9 507 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 ACCSLQ4AC99 568 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 KRT25Q7Z3Z0 450 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 GLYCTKQ8IVS8 523 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 REXO1Q8N1G1 1221 aaKnown RBP9.33□□□□□ -0.92
HMGB1-203ENST00000341423 VPS50Q96JG6 964 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 ZNF512Q96ME7 567 aaPredicted RBP9.33□□□□□ -0.92
HMGB1-203ENST00000341423 SLC4A9Q96Q91 983 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 CERS4Q9HA82 394 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 NR2E1Q9Y466 385 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 PCDHB6Q9Y5E3 794 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 RPTORQ8N122 1335 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 ARHGEF40Q8TER5 1519 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 ARMC6Q6NXE6 501 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 PAWRQ96IZ0 340 aaKnown RBP9.33□□□□□ -0.92
HMGB1-203ENST00000341423 THEGQ9P2T0 379 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 CFAP45Q9UL16 551 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 MINPP1Q9UNW1 487 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 FRMPD2Q68DX3 1309 aaPredicted RBP9.33□□□□□ -0.92
HMGB1-203ENST00000341423 DISP2A7MBM2 1401 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 DIP2BQ9P265 1576 aa9.33□□□□□ -0.92
HMGB1-203ENST00000341423 MCM4P33991 863 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 ARID5BQ14865 1188 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 PAXBP1Q9Y5B6 917 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 ABCC3O15438 1527 aa9.32□□□□□ -0.92
HMGB1-203ENST00000341423 SRGAP2CP0DJJ0 459 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms