RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 GOLGA6L9A6NEM1 432 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 LRRIQ4A6NIV6 560 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 MMP1P03956 469 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 YY1P25490 414 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 HOXA13P31271 388 aaPredicted RBP11.28□□□□□ -0.6
USP54-201ENST00000339859 CASQ1P31415 396 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 STX17P56962 302 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 NOC4LQ9BVI4 516 aaKnown RBP11.28□□□□□ -0.6
USP54-201ENST00000339859 PDS5AQ29RF7 1337 aaKnown RBP11.28□□□□□ -0.6
USP54-201ENST00000339859 PHLPP2Q6ZVD8 1323 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 FAM43AQ8N2R8 423 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 NOX5Q96PH1 765 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 TBC1D7Q9P0N9 293 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 DDNO94850 711 aaPredicted RBP11.28□□□□□ -0.6
USP54-201ENST00000339859 GAP43P17677 238 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 VWA3BQ502W6 1294 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 RASEFQ8IZ41 740 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 NLRP7Q8WX94 980 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 CCDC102AQ96A19 550 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 LARSQ9P2J5 1176 aaKnown RBP11.28□□□□□ -0.6
USP54-201ENST00000339859 BTBD18B2RXH4 712 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 ALDH1A1P00352 501 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 TTC16Q8NEE8 873 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 TCP11Q8WWU5 503 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 PPP4CP60510 307 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 TBC1D8BQ0IIM8 1120 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 HSP90B2PQ58FF3 399 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 GPRC5AQ8NFJ5 357 aa11.28□□□□□ -0.6
USP54-201ENST00000339859 SALL1Q9NSC2 1324 aa11.27□□□□□ -0.6
USP54-201ENST00000339859 TYRO3Q06418 890 aa11.27□□□□□ -0.6
USP54-201ENST00000339859 MTMR1Q13613 665 aa11.27□□□□□ -0.6
USP54-201ENST00000339859 AKT1S1Q96B36 256 aa11.27□□□□□ -0.6
USP54-201ENST00000339859 CAMKK2Q96RR4 588 aa11.27□□□□□ -0.6
USP54-201ENST00000339859 DNAJC25Q9H1X3 360 aa11.27□□□□□ -0.6
USP54-201ENST00000339859 STK36Q9NRP7 1315 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 SYNRGQ9UMZ2 1314 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 TMCO5BA8MYB1 307 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 KBTBD13C9JR72 458 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 ZNF202O95125 648 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 ADGRF4Q8IZF3 695 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 ENAHQ8N8S7 591 aaPredicted RBP11.27□□□□□ -0.61
USP54-201ENST00000339859 MLKLQ8NB16 471 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 LMBR1Q8WVP7 490 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 TNNT1P13805 278 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 RAD51AP2Q09MP3 1159 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 DPF2Q92785 391 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 PGBD1Q96JS3 809 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 MRC1P22897 1456 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 GBP2P32456 591 aaPredicted RBP11.27□□□□□ -0.61
USP54-201ENST00000339859 ELMSAN1Q6PJG2 1045 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 CYB5R4Q7L1T6 521 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 NBPF11Q86T75 865 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 FAM178BQ8IXR5 827 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 CSGALNACT2Q8N6G5 542 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 C7orf31Q8N865 590 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 NSUN7Q8NE18 718 aaKnown RBP11.27□□□□□ -0.61
USP54-201ENST00000339859 UPF1Q92900 1129 aaKnown RBP eCLIP11.27□□□□□ -0.61
USP54-201ENST00000339859 PFASO15067 1338 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 KLRK1P26718 216 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 PFKFB3Q16875 520 aaPredicted RBP11.27□□□□□ -0.61
USP54-201ENST00000339859 ERO1BQ86YB8 467 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 TBC1D22BQ9NU19 505 aa11.27□□□□□ -0.61
USP54-201ENST00000339859 TOPAZ1Q8N9V7 1692 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 TLR3O15455 904 aaKnown RBP11.26□□□□□ -0.61
USP54-201ENST00000339859 PLEKHA8P1O95397 391 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 PPM1FP49593 454 aaPredicted RBP11.26□□□□□ -0.61
USP54-201ENST00000339859 PTGDRQ13258 359 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 SEPT7Q16181 437 aaKnown RBP11.26□□□□□ -0.61
USP54-201ENST00000339859 CEP170P1Q96L14 293 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 CLSTN2Q9H4D0 955 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 GOLGA6L10A6NI86 522 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 TNNI1P19237 187 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 RAPGEF1Q13905 1077 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 ADALQ6DHV7 355 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 PDXDC2PQ6P474 469 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 FBXO18Q8NFZ0 1043 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 MACROD2A1Z1Q3 448 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 N4BP1O75113 896 aaKnown RBP11.26□□□□□ -0.61
USP54-201ENST00000339859 MYL5Q02045 173 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 SMC1AQ14683 1233 aaKnown RBP11.26□□□□□ -0.61
USP54-201ENST00000339859 ZNF710Q8N1W2 664 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 CCDC112Q8NEF3 446 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 VCPKMTQ9H867 229 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 MTMR4Q9NYA4 1195 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 ACTN2P35609 894 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 PRAMEF18Q5VWM3 479 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 MB21D2Q8IYB1 491 aaPredicted RBP11.26□□□□□ -0.61
USP54-201ENST00000339859 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.26□□□□□ -0.61
USP54-201ENST00000339859 TEX13BQ9BXU2 312 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 KIAA1024Q9UPX6 916 aa11.26□□□□□ -0.61
USP54-201ENST00000339859 ARHGEF37A1IGU5 675 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 UBE2Q2LH0YL09 131 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 NMT2O60551 498 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 SLFNL1Q499Z3 407 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 MYOCDQ8IZQ8 938 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 RASGRP4Q8TDF6 673 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 LY9Q9HBG7 655 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 PAFAH1B1P43034 410 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 NELFCDQ8IXH7 590 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms