RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 HSD17B4P51659 736 aa16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 ZNF445P59923 1031 aa16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 PTGDRQ13258 359 aa16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 ZNF174Q15697 407 aa16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 USP17L6PQ6QN14 398 aa16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 CCDC73Q6ZRK6 1079 aa16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 CCAR1Q8IX12 1150 aaKnown RBP16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 FSIP1Q8NA03 581 aa16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 GOLPH3LQ9H4A5 285 aa16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 GCOM1H8Y6P7 765 aaPredicted RBP16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 CYP3A4P08684 503 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 POLR2MP0CAP2 368 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 ATP2B1P20020 1258 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 CIITAP33076 1130 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 GJA5P36382 358 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 PABPC4Q13310 644 aaKnown RBP eCLIP16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 SNAPC2Q13487 334 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 SNW1Q13573 536 aaKnown RBP16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 TREML2Q5T2D2 321 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 SHC4Q6S5L8 630 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 MCF2L2Q86YR7 1114 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 FMR1NBQ8N0W7 255 aaPredicted RBP16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 C2orf69Q8N8R5 385 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 SLC10A4Q96EP9 437 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 AGBL1Q96MI9 1066 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 P2RX7Q99572 595 aaKnown RBP16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 TEX13BQ9BXU2 312 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 SLC45A1Q9Y2W3 748 aa16.97■□□□□ 0.31
CCDC88C-202ENST00000334448 FRMPD4Q14CM0 1322 aa16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 SPDYE3A6NKU9 549 aa16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 NEMFO60524 1076 aa16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 CELF2O95319 508 aaKnown RBP16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 ZBTB48P10074 688 aaPredicted RBP16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 MCM7P33993 719 aa16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 FMR1Q06787 632 aaKnown RBP eCLIP16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 ZSCAN23Q3MJ62 389 aa16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 RBM43Q6ZSC3 357 aaKnown RBP16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 WNK4Q96J92 1243 aa16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 DACT1Q9NYF0 836 aa16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 RABGAP1Q9Y3P9 1069 aa16.96■□□□□ 0.31
CCDC88C-202ENST00000334448 NR1I2O75469 434 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 LETM1O95202 739 aaPredicted RBP16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 TAL1P17542 331 aaPredicted RBP16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 LONP1P36776 959 aaKnown RBP16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 ARHGAP4P98171 946 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 LETM2Q2VYF4 491 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 GPAT2Q6NUI2 795 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 TIGD1Q96MW7 591 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 MTMR9Q96QG7 549 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 TMEM60Q9H2L4 133 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 CLSTN2Q9H4D0 955 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 EHMT1Q9H9B1 1298 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 RAVER2Q9HCJ3 691 aaKnown RBP16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 CTDP1Q9Y5B0 961 aaPredicted RBP16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 RPTORQ8N122 1335 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 PASKQ96RG2 1323 aa16.95■□□□□ 0.3
CCDC88C-202ENST00000334448 CCNT1O60563 726 aaKnown RBP16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 OR52Z1P0C646 297 aa16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 PFKFB1P16118 471 aa16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 NDUFA8P51970 172 aa16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 TMEM132BQ14DG7 1078 aa16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 CST9Q5W186 159 aa16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 GADL1Q6ZQY3 521 aa16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 ELOA2Q8IYF1 753 aaPredicted RBP16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 GTF3C2Q8WUA4 911 aaPredicted RBP16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 CLIC6Q96NY7 704 aa16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 NUP62CLQ9H1M0 184 aa16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 ZNF408Q9H9D4 720 aa16.94■□□□□ 0.3
CCDC88C-202ENST00000334448 NFIBO00712 420 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 CTAGE5O15320 804 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 KINO60870 393 aaKnown RBP16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 CETPP11597 493 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 GTF2A2P52657 109 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 GRIN1Q05586 938 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 IL17AQ16552 155 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 Q4G0T1 1027 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 POTEEQ6S8J3 1075 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 MS4A4AQ96JQ5 239 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 AK8Q96MA6 479 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 CSRNP2Q9H175 543 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 ASCC2Q9H1I8 757 aaPredicted RBP16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 RNF146Q9NTX7 359 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 FAM13BQ9NYF5 915 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 MRVI1Q9Y6F6 885 aa16.93■□□□□ 0.3
CCDC88C-202ENST00000334448 RBBP6Q7Z6E9 1792 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 A0A1B0GVL5 298 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 TBX3O15119 743 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 TDP2O95551 362 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 CFBP00751 764 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 ALAS1P13196 640 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 HOXA13P31271 388 aaPredicted RBP16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 COPB2P35606 906 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 FXR2P51116 673 aaKnown RBP eCLIP16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 HERVK_113P62684 666 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 IRX3P78415 501 aaPredicted RBP16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 SPRYD7Q5W111 196 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 SNRNP48Q6IEG0 339 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 DTHD1Q6ZMT9 781 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 CPXCR1Q8N123 301 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms