RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 USP14P54578 494 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 NONOQ15233 471 aaKnown RBP eCLIP11.7□□□□□ -0.54
COL3A1-202ENST00000317840 TMEM266Q2M3C6 531 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 WDR66Q8TBY9 1149 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 NSUN4Q96CB9 384 aaKnown RBP11.7□□□□□ -0.54
COL3A1-202ENST00000317840 DBNDD1Q9H9R9 158 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 MMP10P09238 476 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 OR52Z1P0C646 297 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 FCER1AP12319 257 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 GSTO1P78417 241 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 SLC7A5Q01650 507 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 IL17AQ16552 155 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 TXNRD1Q16881 649 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 TTC19Q6DKK2 380 aaPredicted RBP11.7□□□□□ -0.54
COL3A1-202ENST00000317840 SV2BQ7L1I2 683 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 TRMT1LQ7Z2T5 733 aaKnown RBP11.7□□□□□ -0.54
COL3A1-202ENST00000317840 IFT81Q8WYA0 676 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 THAP9Q9H5L6 903 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 LRRC10BA6NIK2 292 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 BUB1O43683 1085 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 GNA11P29992 359 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 ZBED6P86452 979 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 MUM1L1Q5H9M0 696 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 CNNM4Q6P4Q7 775 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 RPGRIP1Q96KN7 1286 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 LCMT1Q9UIC8 334 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 CAPN11Q9UMQ6 739 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 KCPQ6ZWJ8 1503 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 H0YHG0 523 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 CCNE1P24864 410 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 TNNI2P48788 182 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 STK4Q13043 487 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 PLCD3Q8N3E9 789 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 DHTKD1Q96HY7 919 aaPredicted RBP11.69□□□□□ -0.54
COL3A1-202ENST00000317840 TSG101Q99816 390 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 ZNF287Q9HBT7 754 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 BMP2KQ9NSY1 1161 aaPredicted RBP11.69□□□□□ -0.54
COL3A1-202ENST00000317840 SHTN1A0MZ66 631 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 MOCS3O95396 460 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 FGFR1OPO95684 399 aaKnown RBP11.69□□□□□ -0.54
COL3A1-202ENST00000317840 GGCXP38435 758 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 SLC51AQ86UW1 340 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 TRIM58Q8NG06 486 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 RRP36Q96EU6 259 aaKnown RBP11.69□□□□□ -0.54
COL3A1-202ENST00000317840 UBA5Q9GZZ9 404 aa11.69□□□□□ -0.54
COL3A1-202ENST00000317840 LUC7LQ9NQ29 371 aaKnown RBP11.69□□□□□ -0.54
COL3A1-202ENST00000317840 ADAMTS3O15072 1205 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 ZEB2O60315 1214 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 ANKRD40Q6AI12 368 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 SELENOOQ9BVL4 669 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 RAB34Q9BZG1 259 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 TSGA10Q9BZW7 698 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 GPCPD1Q9NPB8 672 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 TBC1D7Q9P0N9 293 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 MKRN1Q9UHC7 482 aaKnown RBP11.68□□□□□ -0.54
COL3A1-202ENST00000317840 BTDP43251 543 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 FOXR1Q6PIV2 292 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 SRLQ86TD4 932 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 MICALL1Q8N3F8 863 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 MLXIPQ9HAP2 919 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 NWD2Q9ULI1 1742 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 A0A1W2PQC6 194 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 TRAF5O00463 557 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 HSF2BPO75031 334 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 CACNB3P54284 484 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 HERVK_113P62684 666 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 HLTFQ14527 1009 aaKnown RBP eCLIP11.68□□□□□ -0.54
COL3A1-202ENST00000317840 LRRC41Q15345 812 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 C8orf74Q6P047 294 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 USP17L2Q6R6M4 530 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 TRAPPC11Q7Z392 1133 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 FAM107BQ9H098 131 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 PSD3Q9NYI0 1048 aa11.68□□□□□ -0.54
COL3A1-202ENST00000317840 MYH15Q9Y2K3 1946 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 PSMD14O00487 310 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 EBAG9O00559 213 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 ORC4O43929 436 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 PLEKP08567 350 aaPredicted RBP11.67□□□□□ -0.54
COL3A1-202ENST00000317840 GRAPQ13588 217 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 KRT25Q7Z3Z0 450 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 NEK8Q86SG6 692 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 GRAPLQ8TC17 118 aaPredicted RBP11.67□□□□□ -0.54
COL3A1-202ENST00000317840 COG1Q8WTW3 980 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 REXO2Q9Y3B8 237 aaKnown RBP11.67□□□□□ -0.54
COL3A1-202ENST00000317840 TNS2Q63HR2 1409 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 CLSTN1O94985 981 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 EIF4A3P38919 411 aaKnown RBP11.67□□□□□ -0.54
COL3A1-202ENST00000317840 NPY5RQ15761 445 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 KRT79Q5XKE5 535 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 SLF2Q8IX21 1173 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 REXO1Q8N1G1 1221 aaKnown RBP11.67□□□□□ -0.54
COL3A1-202ENST00000317840 VEZTQ9HBM0 779 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 SMARCAL1Q9NZC9 954 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 VAV2P52735 878 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 RASSF7Q02833 373 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 TTC31Q49AM3 519 aaPredicted RBP11.67□□□□□ -0.54
COL3A1-202ENST00000317840 PRR5LQ6MZQ0 368 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 IRF2BP1Q8IU81 584 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 CCDC170Q8IYT3 715 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 RETREG2Q8NC44 543 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms