RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 RPS6KB1P23443 525 aa9□□□□□ -0.97
VPS41-202ENST00000310301 RPS6KA1Q15418 735 aa9□□□□□ -0.97
VPS41-202ENST00000310301 E2F4Q16254 413 aa9□□□□□ -0.97
VPS41-202ENST00000310301 CSGALNACT2Q8N6G5 542 aa9□□□□□ -0.97
VPS41-202ENST00000310301 FAM212AQ96EL1 285 aa9□□□□□ -0.97
VPS41-202ENST00000310301 RRAGCQ9HB90 399 aa9□□□□□ -0.97
VPS41-202ENST00000310301 LARSQ9P2J5 1176 aaKnown RBP9□□□□□ -0.97
VPS41-202ENST00000310301 EPB41P11171 864 aaKnown RBP9□□□□□ -0.97
VPS41-202ENST00000310301 RPL13P26373 211 aaKnown RBP9□□□□□ -0.97
VPS41-202ENST00000310301 PPP1R2P41236 205 aa9□□□□□ -0.97
VPS41-202ENST00000310301 ICA1Q05084 483 aa9□□□□□ -0.97
VPS41-202ENST00000310301 NCAPG2Q86XI2 1143 aa9□□□□□ -0.97
VPS41-202ENST00000310301 MCF2L2Q86YR7 1114 aa9□□□□□ -0.97
VPS41-202ENST00000310301 CXorf38Q8TB03 319 aa9□□□□□ -0.97
VPS41-202ENST00000310301 ABTB1Q969K4 478 aaPredicted RBP9□□□□□ -0.97
VPS41-202ENST00000310301 XAB2Q9HCS7 855 aaKnown RBP9□□□□□ -0.97
VPS41-202ENST00000310301 ATP8A2Q9NTI2 1148 aa9□□□□□ -0.97
VPS41-202ENST00000310301 JRKLQ9Y4A0 524 aa9□□□□□ -0.97
VPS41-202ENST00000310301 NFE2L3Q9Y4A8 694 aa9□□□□□ -0.97
VPS41-202ENST00000310301 SPECC1L-ADORA2AF8WAN1 911 aa9□□□□□ -0.97
VPS41-202ENST00000310301 MGEA5O60502 916 aa9□□□□□ -0.97
VPS41-202ENST00000310301 SEC31AO94979 1220 aaKnown RBP9□□□□□ -0.97
VPS41-202ENST00000310301 GMPSP49915 693 aaPredicted RBP9□□□□□ -0.97
VPS41-202ENST00000310301 MCTP2Q6DN12 878 aa9□□□□□ -0.97
VPS41-202ENST00000310301 NSMFQ6X4W1 530 aa9□□□□□ -0.97
VPS41-202ENST00000310301 CCDC105Q8IYK2 499 aa9□□□□□ -0.97
VPS41-202ENST00000310301 MSANTD4Q8NCY6 345 aa9□□□□□ -0.97
VPS41-202ENST00000310301 MRFAP1L1Q96HT8 127 aa9□□□□□ -0.97
VPS41-202ENST00000310301 JPH2Q9BR39 696 aaPredicted RBP9□□□□□ -0.97
VPS41-202ENST00000310301 USP32Q8NFA0 1604 aa9□□□□□ -0.97
VPS41-202ENST00000310301 CRKP46108 304 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 GNPTABQ3T906 1256 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 CPXCR1Q8N123 301 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 ANKRD35Q8N283 1001 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 Q9H521 79 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 ADD3Q9UEY8 706 aaKnown RBP8.99□□□□□ -0.97
VPS41-202ENST00000310301 BCAP29Q9UHQ4 241 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 FLOT1O75955 427 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 RFX1P22670 979 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 MAP3K21Q5TCX8 1036 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 RAET1EQ8TD07 263 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 N4BP2L2Q92802 583 aaPredicted RBP8.99□□□□□ -0.97
VPS41-202ENST00000310301 ARMT1Q9H993 441 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 MINPP1Q9UNW1 487 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 FRMD4BQ9Y2L6 1034 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 LRRC23Q53EV4 343 aaPredicted RBP8.99□□□□□ -0.97
VPS41-202ENST00000310301 ZNF34Q8IZ26 560 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 KIFAP3Q92845 792 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 ZBTB40Q9NUA8 1239 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 TBC1D8O95759 1140 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 PCP11498 1178 aaKnown RBP8.99□□□□□ -0.97
VPS41-202ENST00000310301 IFT88Q13099 833 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 RSBN1LQ6PCB5 846 aaPredicted RBP8.99□□□□□ -0.97
VPS41-202ENST00000310301 LRRC8AQ8IWT6 810 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 AFAP1L2Q8N4X5 818 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 RAB17Q9H0T7 212 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 POLR1AO95602 1720 aaPredicted RBP8.99□□□□□ -0.97
VPS41-202ENST00000310301 TAF1CQ15572 869 aaPredicted RBP8.99□□□□□ -0.97
VPS41-202ENST00000310301 CNNM4Q6P4Q7 775 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 NLRX1Q86UT6 975 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 DESI2Q9BSY9 194 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 PPP2R2CQ9Y2T4 447 aa8.99□□□□□ -0.97
VPS41-202ENST00000310301 GPSM2P81274 684 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 MKRN3Q13064 507 aaKnown RBP8.98□□□□□ -0.97
VPS41-202ENST00000310301 SYCE1Q8N0S2 351 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 CAMKK2Q96RR4 588 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 ZKSCAN3Q9BRR0 538 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 MTIF3Q9H2K0 278 aaKnown RBP8.98□□□□□ -0.97
VPS41-202ENST00000310301 AZI2Q9H6S1 392 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 ATRNO75882 1429 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 BACH1O14867 736 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 CUTAO60888 179 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 PLCD1P51178 756 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 MFSD14CQ5VZR4 134 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 PEX26Q7Z412 305 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 KBTBD3Q8NAB2 608 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 WRNIP1Q96S55 665 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 PARK7Q99497 189 aaKnown RBP8.98□□□□□ -0.97
VPS41-202ENST00000310301 VPS37BQ9H9H4 285 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 PARP2Q9UGN5 583 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 ADGRB1O14514 1584 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 SASH1O94885 1247 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 ZAP70P43403 619 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 CFAP61Q8NHU2 1237 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 KLHDC4Q8TBB5 520 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 HOMER3Q9NSC5 361 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 PYCARDQ9ULZ3 195 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 SNX14Q9Y5W7 946 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 A0A087WUV0 522 aaPredicted RBP8.98□□□□□ -0.97
VPS41-202ENST00000310301 LONRF2Q1L5Z9 754 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 RILPL1Q5EBL4 403 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 USP50Q70EL3 339 aaPredicted RBP8.98□□□□□ -0.97
VPS41-202ENST00000310301 CCDC13Q8IYE1 715 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 TRMT44Q8IYL2 757 aaKnown RBP8.98□□□□□ -0.97
VPS41-202ENST00000310301 TBC1D16Q8TBP0 767 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 KIFC2Q96AC6 838 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 IFIH1Q9BYX4 1025 aaKnown RBP8.98□□□□□ -0.97
VPS41-202ENST00000310301 KANSL2Q9H9L4 492 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 CTTNBP2NLQ9P2B4 639 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 ZBTB12Q9Y330 459 aaPredicted RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms