RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 COPB1P53618 953 aaKnown RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 RRAGBQ5VZM2 374 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 SYCE1Q8N0S2 351 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 DHX58Q96C10 678 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 PLVAPQ9BX97 442 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 STRN4Q9NRL3 753 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 PARP2Q9UGN5 583 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 N4BP2Q86UW6 1770 aaPredicted RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 ERBB3P21860 1342 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 PRPF3O43395 683 aaKnown RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 PTPAQ15257 358 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 AKNAD1Q5T1N1 836 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 ZNF658Q5TYW1 1059 aaPredicted RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 NEK11Q8NG66 645 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 CEP70Q8NHQ1 597 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 CAVIN3Q969G5 261 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 JAKMIP2Q96AA8 810 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 RIC8AQ9NPQ8 531 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 HDAC9Q9UKV0 1011 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 PA2G4Q9UQ80 394 aaKnown RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 MST1RQ04912 1400 aa7.02□□□□□ -1.28
VPS35-201ENST00000299138 LGALS16A8MUM7 142 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 WDR46O15213 610 aaKnown RBP7.02□□□□□ -1.29
VPS35-201ENST00000299138 CREB3O43889 395 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 GCP02774 474 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 UBA7P41226 1012 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 DDR1Q08345 913 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 TMEM266Q2M3C6 531 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 C8orf74Q6P047 294 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 PPP1R21Q6ZMI0 780 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ARHGAP24Q8N264 748 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 MPHOSPH6Q99547 160 aaKnown RBP7.02□□□□□ -1.29
VPS35-201ENST00000299138 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS35-201ENST00000299138 ARHGEF9O43307 516 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 PSMD2Q13200 908 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 SNCBQ16143 134 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ORAI2Q96SN7 254 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ABCF2Q9UG63 623 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ARHGAP42A6NI28 874 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 USP27XA6NNY8 438 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ATP2A1O14983 1001 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 NDUFA10O95299 355 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 FLOT2Q14254 428 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ARID5BQ14865 1188 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 PPP1R7Q15435 360 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 CCDC26Q8TAB7 109 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 DNAJC7Q99615 494 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ZNF446Q9NWS9 450 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ZNF609O15014 1411 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 CFAP73A6NFT4 308 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 FSBPO95073 299 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 CLTAP09496 248 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 IL1RL1Q01638 556 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 NBPF3Q9H094 633 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ABCB6Q9NP58 842 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 MAN1B1Q9UKM7 699 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 CCDC194A0A1B0GVG4 234 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 PLCB3Q01970 1234 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 ZKSCAN8Q15776 578 aaPredicted RBP7.02□□□□□ -1.29
VPS35-201ENST00000299138 ZNF589Q86UQ0 364 aaPredicted RBP7.02□□□□□ -1.29
VPS35-201ENST00000299138 SPATA17Q96L03 361 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 PCDH11XQ9BZA7 1347 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 PCDH11YQ9BZA8 1340 aa7.02□□□□□ -1.29
VPS35-201ENST00000299138 USP54Q70EL1 1684 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 FAM208AQ9UK61 1670 aaKnown RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 GPAA1O43292 621 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 EEF1DP29692 281 aaKnown RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 PROM2Q8N271 834 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 KIFC2Q96AC6 838 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 SPZ1Q9BXG8 430 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 LZTFL1Q9NQ48 299 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 STK17AQ9UEE5 414 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 FAM169AQ9Y6X4 670 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 EIF3HO15372 352 aaKnown RBP eCLIP7.01□□□□□ -1.29
VPS35-201ENST00000299138 MPRIPQ6WCQ1 1025 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 ZNF572Q7Z3I7 529 aaPredicted RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 CCDC89Q8N998 374 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 CALML4Q96GE6 196 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 TRIM47Q96LD4 638 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 FAN1Q9Y2M0 1017 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 UBN2Q6ZU65 1347 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 TOPAZ1Q8N9V7 1692 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 PVALEFA0A1B0GWK0 134 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 GSTA1P08263 222 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 IDEP14735 1019 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 CCNE1P24864 410 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 CASP14P31944 242 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 PPP2R5CQ13362 524 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 CWF19L2Q2TBE0 894 aaKnown RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 KRT25Q7Z3Z0 450 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 PBKQ96KB5 322 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 SLC26A6Q9BXS9 759 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 CAPN11Q9UMQ6 739 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 H0YC42 278 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 PARP10Q53GL7 1025 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 PHLDB3Q6NSJ2 640 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 LPIN2Q92539 896 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 JPH2Q9BR39 696 aaPredicted RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 MXD3Q9BW11 206 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 RPL26L1Q9UNX3 145 aaKnown RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms