RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 ATP8B2P98198 1209 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 SLC9C2Q5TAH2 1124 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 TRIM42Q8IWZ5 723 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 DLGAP2Q9P1A6 1054 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 ANO5Q75V66 913 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 AP1M1Q9BXS5 423 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 ETNK1Q9HBU6 452 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 SFI1A8K8P3 1242 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 HNRNPH1P31943 449 aaKnown RBP12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 SERPINB10P48595 397 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 ADCK1Q86TW2 530 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 MAGEB6Q8N7X4 407 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 OLFML3Q9NRN5 406 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 PPP1R1BQ9UD71 204 aaPredicted RBP12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 SMARCA4P51532 1647 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 VCAM1P19320 739 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 CNGA3Q16281 694 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 DDX42Q86XP3 938 aaKnown RBP eCLIP12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 THAP11Q96EK4 314 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 B4DLN1 442 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 CCDC90BQ9GZT6 254 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 C10orf88Q9H8K7 445 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 MRPL44Q9H9J2 332 aaKnown RBP12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 ATP11BQ9Y2G3 1177 aa12.76□□□□□ -0.37
SHROOM3-201ENST00000296043 PDE5AO76074 875 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 GSPT1P15170 499 aaKnown RBP12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 KLC1Q07866 573 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 RBL2Q08999 1139 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 GPC4O75487 556 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 MYLK4Q86YV6 388 aaPredicted RBP12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 BAG3O95817 575 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 GABPB2Q8TAK5 448 aaPredicted RBP12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 PITPNM3Q9BZ71 974 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 ZBTB40Q9NUA8 1239 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 GMNCA6NCL1 334 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 NVLO15381 856 aaKnown RBP12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 STX1BP61266 288 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 DYMQ7RTS9 669 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 TEKT4Q8WW24 435 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 JDP2Q8WYK2 163 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 ZBTB3Q9H5J0 574 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 DIABLOQ9NR28 239 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 GOLGA8QA0A0J9YX86 632 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 GOLGA8OA6NCC3 632 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 GOLGA8NF8WBI6 632 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 FOSL2P15408 326 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 BTNL9Q6UXG8 535 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 STAMBPL1Q96FJ0 436 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 ZBED2Q9BTP6 218 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 UPF3AQ9H1J1 476 aaKnown RBP12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 IL16Q14005 1332 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 NOP56O00567 594 aaKnown RBP12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 MLH1P40692 756 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 SLF2Q8IX21 1173 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 FNBP1Q96RU3 617 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 KCNJ14Q9UNX9 436 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 FTCDO95954 541 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 SERPINB1P30740 379 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 SP4Q02446 784 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 TTBK2Q6IQ55 1244 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 hCG_1642624A0A1W2PR95 340 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 NDUFA8P51970 172 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 TRIM25Q14258 630 aaKnown RBP12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 BRD8Q9H0E9 1235 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 ATG16L1Q676U5 607 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 ETAA1Q9NY74 926 aa12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 C6orf203Q9P0P8 240 aaPredicted RBP12.75□□□□□ -0.37
SHROOM3-201ENST00000296043 NBPF26B4DH59 902 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 PGRMC1O00264 195 aaKnown RBP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 GNA11P29992 359 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 NBPF15Q8N660 670 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 ANAPC5Q9UJX4 755 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 SRGAP2O75044 1071 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 SKAP2O75563 359 aaPredicted RBP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 MT-ND3P03897 115 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 ASZ1Q8WWH4 475 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 FMO2Q99518 471 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 RNPEPQ9H4A4 650 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 DCTN4Q9UJW0 460 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 EPHB1P54762 984 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 TMEM87AQ8NBN3 555 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 GSDMAQ96QA5 445 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 GCNT3O95395 438 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 DLGAP3O95886 979 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 TRIM16LQ309B1 348 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 NEK9Q8TD19 979 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 EMILIN1Q9Y6C2 1016 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 BCRP11274 1271 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 NONOQ15233 471 aaKnown RBP eCLIP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 HECW1Q76N89 1606 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 BZW1Q7L1Q6 419 aaKnown RBP12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 ARHGAP45Q92619 1136 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 MYL10Q9BUA6 226 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 TRIM15Q9C019 465 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 LRRC36Q1X8D7 754 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 DCTPP1Q9H773 170 aa12.74□□□□□ -0.37
SHROOM3-201ENST00000296043 TLK1Q9UKI8 766 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms