RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 CEP290O15078 2479 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 ATP2A1O14983 1001 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 PPFIA3O75145 1194 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 FDX1P10109 184 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 KRT85P78386 507 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 SSRP1Q08945 709 aaKnown RBP28.32■■■□□ 2.12
SSBP4-201ENST00000270061 NUP133Q8WUM0 1156 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 MMP19Q99542 508 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 COBLO75128 1261 aa28.31■■■□□ 2.12
SSBP4-201ENST00000270061 MBD3O95983 291 aa28.31■■■□□ 2.12
SSBP4-201ENST00000270061 KCTD2Q14681 263 aa28.31■■■□□ 2.12
SSBP4-201ENST00000270061 PLA2G6O60733 806 aa28.3■■■□□ 2.12
SSBP4-201ENST00000270061 RASGRP2Q7LDG7 609 aa28.3■■■□□ 2.12
SSBP4-201ENST00000270061 DCAF4Q8WV16 495 aa28.3■■■□□ 2.12
SSBP4-201ENST00000270061 WASF1Q92558 559 aa28.3■■■□□ 2.12
SSBP4-201ENST00000270061 PHKBQ93100 1093 aa28.3■■■□□ 2.12
SSBP4-201ENST00000270061 OAZ1P54368 228 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 OLFML2BQ68BL8 750 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 MAP3K14Q99558 947 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 ALG1Q9BT22 464 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 GDPD2Q9HCC8 539 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 RAVER2Q9HCJ3 691 aaKnown RBP28.29■■■□□ 2.12
SSBP4-201ENST00000270061 FARP2O94887 1054 aaPredicted RBP28.29■■■□□ 2.12
SSBP4-201ENST00000270061 CCND3P30281 292 aaPredicted RBP28.29■■■□□ 2.12
SSBP4-201ENST00000270061 CCDC96Q2M329 555 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 ATL3Q6DD88 541 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 TRIM22Q8IYM9 498 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 GPT2Q8TD30 523 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 RIPK3Q9Y572 518 aa28.29■■■□□ 2.12
SSBP4-201ENST00000270061 FRMPD3Q5JV73 1810 aa28.28■■■□□ 2.12
SSBP4-201ENST00000270061 NCLP19338 710 aaKnown RBP28.28■■■□□ 2.12
SSBP4-201ENST00000270061 CYP2C19P33261 490 aa28.28■■■□□ 2.12
SSBP4-201ENST00000270061 UBE2Q1Q7Z7E8 422 aa28.28■■■□□ 2.12
SSBP4-201ENST00000270061 SLC26A6Q9BXS9 759 aa28.28■■■□□ 2.12
SSBP4-201ENST00000270061 SCAND2PQ9GZW5 306 aaPredicted RBP28.27■■■□□ 2.12
SSBP4-201ENST00000270061 ELP1O95163 1332 aa28.27■■■□□ 2.12
SSBP4-201ENST00000270061 FOSBP53539 338 aa28.27■■■□□ 2.12
SSBP4-201ENST00000270061 RNF26Q9BY78 433 aaPredicted RBP28.27■■■□□ 2.12
SSBP4-201ENST00000270061 KAT14Q9H8E8 782 aa28.27■■■□□ 2.12
SSBP4-201ENST00000270061 FIBPO43427 364 aa28.26■■■□□ 2.11
SSBP4-201ENST00000270061 DEXIO95424 95 aa28.26■■■□□ 2.11
SSBP4-201ENST00000270061 IGHA2P01877 340 aa28.26■■■□□ 2.11
SSBP4-201ENST00000270061 PGK2P07205 417 aa28.26■■■□□ 2.11
SSBP4-201ENST00000270061 FAM173BQ6P4H8 233 aa28.26■■■□□ 2.11
SSBP4-201ENST00000270061 MAML3Q96JK9 1138 aa28.26■■■□□ 2.11
SSBP4-201ENST00000270061 SMCHD1A6NHR9 2005 aa28.26■■■□□ 2.11
SSBP4-201ENST00000270061 UBE2HP62256 183 aa28.25■■■□□ 2.11
SSBP4-201ENST00000270061 GUCY1B3Q02153 619 aa28.25■■■□□ 2.11
SSBP4-201ENST00000270061 FUT2Q10981 343 aa28.25■■■□□ 2.11
SSBP4-201ENST00000270061 PRPF38BQ5VTL8 546 aaKnown RBP28.25■■■□□ 2.11
SSBP4-201ENST00000270061 ANKLE1Q8NAG6 615 aa28.25■■■□□ 2.11
SSBP4-201ENST00000270061 CFAP45Q9UL16 551 aa28.25■■■□□ 2.11
SSBP4-201ENST00000270061 PRR12Q9ULL5 1215 aa28.25■■■□□ 2.11
SSBP4-201ENST00000270061 MYH15Q9Y2K3 1946 aa28.25■■■□□ 2.11
SSBP4-201ENST00000270061 PDHBP11177 359 aa28.24■■■□□ 2.11
SSBP4-201ENST00000270061 CTCFLQ8NI51 663 aaPredicted RBP28.24■■■□□ 2.11
SSBP4-201ENST00000270061 OGDHLQ9ULD0 1010 aa28.24■■■□□ 2.11
SSBP4-201ENST00000270061 CHST13Q8NET6 341 aa28.24■■■□□ 2.11
SSBP4-201ENST00000270061 GZF1Q9H116 711 aaPredicted RBP28.24■■■□□ 2.11
SSBP4-201ENST00000270061 FBXO40Q9UH90 709 aa28.24■■■□□ 2.11
SSBP4-201ENST00000270061 DIS3Q9Y2L1 958 aaKnown RBP28.24■■■□□ 2.11
SSBP4-201ENST00000270061 GADD45BO75293 160 aaPredicted RBP28.23■■■□□ 2.11
SSBP4-201ENST00000270061 CNGA1P29973 690 aa28.23■■■□□ 2.11
SSBP4-201ENST00000270061 TMTC3Q6ZXV5 915 aa28.23■■■□□ 2.11
SSBP4-201ENST00000270061 BRAPQ7Z569 592 aa28.23■■■□□ 2.11
SSBP4-201ENST00000270061 PNMA1Q8ND90 353 aa28.23■■■□□ 2.11
SSBP4-201ENST00000270061 AIFM3Q96NN9 605 aa28.23■■■□□ 2.11
SSBP4-201ENST00000270061 FRMPD2Q68DX3 1309 aaPredicted RBP28.23■■■□□ 2.11
SSBP4-201ENST00000270061 PRPF3O43395 683 aaKnown RBP28.22■■■□□ 2.11
SSBP4-201ENST00000270061 ZNF792Q3KQV3 632 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 KRT40Q6A162 431 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 TTBK2Q6IQ55 1244 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 HTATIP2Q9BUP3 242 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 GPCPD1Q9NPB8 672 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 HOMER2Q9NSB8 354 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 ZNF536O15090 1300 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 CYBAP13498 195 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 KIF5BP33176 963 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 SLC16A2P36021 539 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 TRIM29Q14134 588 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 LHX8Q68G74 356 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 BTNL9Q6UXG8 535 aa28.22■■■□□ 2.11
SSBP4-201ENST00000270061 PAWRQ96IZ0 340 aaKnown RBP28.22■■■□□ 2.11
SSBP4-201ENST00000270061 ZNF396Q96N95 335 aaPredicted RBP28.22■■■□□ 2.11
SSBP4-201ENST00000270061 MCM3APO60318 1980 aa28.21■■■□□ 2.11
SSBP4-201ENST00000270061 MSCO60682 206 aa28.21■■■□□ 2.11
SSBP4-201ENST00000270061 SNHG28P0DPA3 235 aa28.21■■■□□ 2.11
SSBP4-201ENST00000270061 CCDC174Q6PII3 467 aa28.21■■■□□ 2.11
SSBP4-201ENST00000270061 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.21■■■□□ 2.118e-7■■■■□ 26.7
SSBP4-201ENST00000270061 ANKRD35Q8N283 1001 aa28.21■■■□□ 2.11
SSBP4-201ENST00000270061 TRPV1Q8NER1 839 aa28.21■■■□□ 2.11
SSBP4-201ENST00000270061 AGBL1Q96MI9 1066 aa28.21■■■□□ 2.11
SSBP4-201ENST00000270061 DNAH12Q6ZR08 3092 aa28.2■■■□□ 2.11
SSBP4-201ENST00000270061 SNAP25P60880 206 aa28.2■■■□□ 2.11
SSBP4-201ENST00000270061 ZNF543Q08ER8 600 aa28.2■■■□□ 2.11
SSBP4-201ENST00000270061 SYDE2Q5VT97 1194 aa28.2■■■□□ 2.11
SSBP4-201ENST00000270061 NECAB2Q7Z6G3 386 aa28.2■■■□□ 2.11
SSBP4-201ENST00000270061 LEO1Q8WVC0 666 aaPredicted RBP28.2■■■□□ 2.11
SSBP4-201ENST00000270061 GJB4Q9NTQ9 266 aa28.2■■■□□ 2.11
SSBP4-201ENST00000270061 TFIP11Q9UBB9 837 aaKnown RBP28.2■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms