RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 CRACR2AQ9BSW2 395 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 MTA3Q9BTC8 594 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 DEF6Q9H4E7 631 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 RAB21Q9UL25 225 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 ZNF263O14978 683 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 RNF40O75150 1001 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 PICALMQ13492 652 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 ZNF507Q8TCN5 953 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 COG1Q8WTW3 980 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 NLRC4Q9NPP4 1024 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 ATP8A2Q9NTI2 1148 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 ARPP21Q9UBL0 812 aaPredicted RBP10.19□□□□□ -0.78
MSH4-201ENST00000263187 USP21Q9UK80 565 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 SBF2Q86WG5 1849 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 STXBP3O00186 592 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 ONECUT3O60422 494 aaPredicted RBP10.19□□□□□ -0.78
MSH4-201ENST00000263187 C12orf60Q5U649 245 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 TRAPPC11Q7Z392 1133 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 TBCKQ8TEA7 893 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 NGLY1Q96IV0 654 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 EHD4Q9H223 541 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 CAPN11Q9UMQ6 739 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 THRAP3Q9Y2W1 955 aaKnown RBP10.19□□□□□ -0.78
MSH4-201ENST00000263187 CAPN6Q9Y6Q1 641 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 DUOX1Q9NRD9 1551 aa10.19□□□□□ -0.78
MSH4-201ENST00000263187 GGCXP38435 758 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 TRAPPC10P48553 1259 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 MEX3CQ5U5Q3 659 aaKnown RBP10.18□□□□□ -0.78
MSH4-201ENST00000263187 NFRKBQ6P4R8 1299 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 RRAGAQ7L523 313 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 LRRC47Q8N1G4 583 aaKnown RBP10.18□□□□□ -0.78
MSH4-201ENST00000263187 GIMAP8Q8ND71 665 aaPredicted RBP10.18□□□□□ -0.78
MSH4-201ENST00000263187 P2RX5Q93086 422 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 EXOC4Q96A65 974 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 RRP36Q96EU6 259 aaKnown RBP10.18□□□□□ -0.78
MSH4-201ENST00000263187 NUDT12Q9BQG2 462 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 TRIM9Q9C026 710 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 GPCPD1Q9NPB8 672 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 MYH14Q7Z406 1995 aaKnown RBP10.18□□□□□ -0.78
MSH4-201ENST00000263187 USP17L5A8MUK1 530 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 KRT86O43790 486 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 FGRP09769 529 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 ACTN2P35609 894 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 ARL6IP4Q66PJ3 421 aaKnown RBP10.18□□□□□ -0.78
MSH4-201ENST00000263187 BARGINQ6ZT62 677 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 PROCA1Q8NCQ7 364 aaPredicted RBP10.18□□□□□ -0.78
MSH4-201ENST00000263187 SEMA6BQ9H3T3 888 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 ZHX3Q9H4I2 956 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 HAUS4Q9H6D7 363 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 FEZ2Q9UHY8 353 aaPredicted RBP10.18□□□□□ -0.78
MSH4-201ENST00000263187 AKR1B10O60218 316 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 TDP2O95551 362 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 OR52Z1P0C646 297 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 DNM2P50570 870 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 USP14P54578 494 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 KIF5AQ12840 1032 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 SF3B3Q15393 1217 aaKnown RBP10.18□□□□□ -0.78
MSH4-201ENST00000263187 KIAA0895Q8NCT3 520 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 MS4A14Q96JA4 679 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 DNAJC7Q99615 494 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 KBTBD4Q9NVX7 518 aa10.18□□□□□ -0.78
MSH4-201ENST00000263187 PDS5AQ29RF7 1337 aaKnown RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 POTEB2H3BUK9 544 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 MYO1CO00159 1063 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 CYLC1P35663 651 aaPredicted RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 EIF4A3P38919 411 aaKnown RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 TRIM14Q14142 442 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 SPA17Q15506 151 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 UBE2SQ16763 222 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 ZNF772Q68DY9 489 aaPredicted RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 NELFCDQ8IXH7 590 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 HNRNPLLQ8WVV9 542 aaKnown RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 EYA3Q99504 573 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 BARHL2Q9NY43 387 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 ESYT3A0FGR9 886 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 MARCH6O60337 910 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 RHOBTB3O94955 611 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 SRGNP10124 158 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 EEF1GP26641 437 aaKnown RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 TNNI2P48788 182 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 RASSF7Q02833 373 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 GFPT1Q06210 699 aaPredicted RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 TDRD12Q587J7 1177 aaKnown RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 CT47A1Q5JQC4 288 aaPredicted RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 SOGA3Q5TF21 947 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 SND1Q7KZF4 910 aaKnown RBP eCLIP10.17□□□□□ -0.78
MSH4-201ENST00000263187 GOLGA6L1Q8N7Z2 621 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 SECISBP2LQ93073 1101 aaKnown RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 CDK5RAP3Q96JB5 506 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 LRRC1Q9BTT6 524 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 IFIH1Q9BYX4 1025 aaKnown RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 DMGDHQ9UI17 866 aaKnown RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 PACSIN2Q9UNF0 486 aaPredicted RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 TIAM2Q8IVF5 1701 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 SLC37A4O43826 429 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 SYF2O95926 243 aaKnown RBP10.17□□□□□ -0.78
MSH4-201ENST00000263187 SLC16A2P36021 539 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 KRT83P78385 493 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 GRM4Q14833 912 aa10.17□□□□□ -0.78
MSH4-201ENST00000263187 MIIPQ5JXC2 388 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms