RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 USP5P45974 858 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 TBC1D8BQ0IIM8 1120 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 LETM2Q2VYF4 491 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 HSP90B2PQ58FF3 399 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 TMC4Q7Z404 712 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 EXOC4Q96A65 974 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 TUBGCP2Q9BSJ2 902 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 JADE2Q9NQC1 790 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 MAGEC2Q9UBF1 373 aaPredicted RBP11.24□□□□□ -0.61
LIG3-201ENST00000262327 A0A1B0GUL6 1792 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 LGALS16A8MUM7 142 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 H7C1D1 291 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 PDE2AO00408 941 aaPredicted RBP11.24□□□□□ -0.61
LIG3-201ENST00000262327 CYTH3O43739 400 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 KLRC4O43908 158 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 BBOX1O75936 387 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 MMP10P09238 476 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 C2orf54Q08AI8 447 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 STK4Q13043 487 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 CT47A1Q5JQC4 288 aaPredicted RBP11.24□□□□□ -0.61
LIG3-201ENST00000262327 CCDC148Q8NFR7 591 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 HNRNPLLQ8WVV9 542 aaKnown RBP11.24□□□□□ -0.61
LIG3-201ENST00000262327 JAKMIP2Q96AA8 810 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 MKNK2Q9HBH9 465 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 RMND1Q9NWS8 449 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 PCDHA6Q9UN73 950 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 PCDHA8Q9Y5H6 950 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 DOCK2Q92608 1830 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 DUOX1Q9NRD9 1551 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 RASSF10A6NK89 507 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 EIF3JO75822 258 aaKnown RBP11.23□□□□□ -0.61
LIG3-201ENST00000262327 PLCG1P19174 1290 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 FECHP22830 423 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 LONP1P36776 959 aaKnown RBP11.23□□□□□ -0.61
LIG3-201ENST00000262327 MTIF2P46199 727 aaKnown RBP11.23□□□□□ -0.61
LIG3-201ENST00000262327 PDE4DQ08499 809 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 GRIK5Q16478 980 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 FAM204AQ9H8W3 233 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 PCDHA4Q9UN74 947 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 SAR1BQ9Y6B6 198 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 POTEB2H3BUK9 544 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 HIBADHP31937 336 aaKnown RBP11.23□□□□□ -0.61
LIG3-201ENST00000262327 CXCR5P32302 372 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 ACTN2P35609 894 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 PDE6BP35913 854 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 ASIC1P78348 528 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 ANKRD40Q6AI12 368 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 TRAPPC11Q7Z392 1133 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 DZIP1Q86YF9 867 aaKnown RBP11.23□□□□□ -0.61
LIG3-201ENST00000262327 ANKRD13CQ8N6S4 541 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 ZNF507Q8TCN5 953 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 DUSP9Q99956 384 aaKnown RBP11.23□□□□□ -0.61
LIG3-201ENST00000262327 RASSF4Q9H2L5 321 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 NHEJ1Q9H9Q4 299 aaPredicted RBP11.23□□□□□ -0.61
LIG3-201ENST00000262327 EHD2Q9NZN4 543 aa11.23□□□□□ -0.61
LIG3-201ENST00000262327 PSMA7O14818 248 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 TECP42680 631 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 DNA2P51530 1060 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 LEKR1Q6ZMV7 388 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 DEFB132Q7Z7B7 95 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 BANK1Q8NDB2 785 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 SLC39A2Q9NP94 309 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 ORC4O43929 436 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 CCNT1O60563 726 aaKnown RBP11.22□□□□□ -0.61
LIG3-201ENST00000262327 FGRP09769 529 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 KIF5BP33176 963 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 TRAPPC10P48553 1259 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 KCTD19Q17RG1 926 aaPredicted RBP11.22□□□□□ -0.61
LIG3-201ENST00000262327 TTI2Q6NXR4 508 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 SH3RF3Q8TEJ3 882 aaPredicted RBP11.22□□□□□ -0.61
LIG3-201ENST00000262327 CNOT6LQ96LI5 555 aaKnown RBP11.22□□□□□ -0.61
LIG3-201ENST00000262327 MYCBPQ99417 103 aaPredicted RBP11.22□□□□□ -0.61
LIG3-201ENST00000262327 FAM207AQ9NSI2 230 aaPredicted RBP11.22□□□□□ -0.61
LIG3-201ENST00000262327 LRWD1Q9UFC0 647 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 LEMD3Q9Y2U8 911 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 EP400Q96L91 3159 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 MYO1CO00159 1063 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 RNF40O75150 1001 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 IDEP14735 1019 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 USP14P54578 494 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 TRIM14Q14142 442 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 DYMQ7RTS9 669 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 MAPKAPK5Q8IW41 473 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 SLC16A10Q8TF71 515 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 TGFBRAP1Q8WUH2 860 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 NOC4LQ9BVI4 516 aaKnown RBP11.22□□□□□ -0.61
LIG3-201ENST00000262327 MLXIPQ9HAP2 919 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 MAD2L2Q9UI95 211 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 CAPN11Q9UMQ6 739 aa11.22□□□□□ -0.61
LIG3-201ENST00000262327 EPHB6O15197 1021 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 TSPY3P0CV98 308 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 TSPY8P0CW00 308 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 NPR1P16066 1061 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 CALML3P27482 149 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 STIM1Q13586 685 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 FBXO33Q7Z6M2 555 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 CABP7Q86V35 215 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 GOLGA5Q8TBA6 731 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 HDAC7Q8WUI4 952 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 DNAJC7Q99615 494 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms