RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 MLXIPQ9HAP2 919 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 LRWD1Q9UFC0 647 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 SEMA3EO15041 775 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 RPS6KA4O75676 772 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 PCP11498 1178 aaKnown RBP23.82■■□□□ 1.4
TRIM28-201ENST00000253024 C2orf54Q08AI8 447 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.82■■□□□ 1.4
TRIM28-201ENST00000253024 CCDC151A5D8V7 595 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 SNAP25P60880 206 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 GTF2IP78347 998 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 SLC10A5Q5PT55 438 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 KIAA0895Q8NCT3 520 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 P2RX5Q93086 422 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 CDK5RAP3Q96JB5 506 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 LRRIQ3A6PVS8 624 aaPredicted RBP23.81■■□□□ 1.4
TRIM28-201ENST00000253024 M0R2N6 131 aa23.81■■□□□ 1.4
TRIM28-201ENST00000253024 GIMAP8Q8ND71 665 aaPredicted RBP23.81■■□□□ 1.4
TRIM28-201ENST00000253024 WDR66Q8TBY9 1149 aa23.81■■□□□ 1.4
TRIM28-201ENST00000253024 RRP36Q96EU6 259 aaKnown RBP23.81■■□□□ 1.4
TRIM28-201ENST00000253024 NLRC4Q9NPP4 1024 aa23.81■■□□□ 1.4
TRIM28-201ENST00000253024 KBTBD4Q9NVX7 518 aa23.81■■□□□ 1.4
TRIM28-201ENST00000253024 PALM3A6NDB9 673 aaPredicted RBP23.81■■□□□ 1.4
TRIM28-201ENST00000253024 CACNB3P54284 484 aa23.81■■□□□ 1.4
TRIM28-201ENST00000253024 KCNK18Q7Z418 384 aa23.81■■□□□ 1.4
TRIM28-201ENST00000253024 NEK8Q86SG6 692 aa23.81■■□□□ 1.4
TRIM28-201ENST00000253024 DNAAF5Q86Y56 855 aa23.81■■□□□ 1.4
TRIM28-201ENST00000253024 ITIH6Q6UXX5 1313 aa23.8■■□□□ 1.4
TRIM28-201ENST00000253024 NAP1L1P55209 391 aaKnown RBP23.8■■□□□ 1.4
TRIM28-201ENST00000253024 RNASE9P60153 205 aaKnown RBP23.8■■□□□ 1.4
TRIM28-201ENST00000253024 NELFCDQ8IXH7 590 aa23.8■■□□□ 1.4
TRIM28-201ENST00000253024 RTFDC1Q9BY42 306 aaPredicted RBP23.8■■□□□ 1.4
TRIM28-201ENST00000253024 EZH2Q15910 746 aaKnown RBP23.8■■□□□ 1.4
TRIM28-201ENST00000253024 REXO1Q8N1G1 1221 aaKnown RBP23.8■■□□□ 1.4
TRIM28-201ENST00000253024 CCDC51Q96ER9 411 aa23.8■■□□□ 1.4
TRIM28-201ENST00000253024 MMTAG2Q9BU76 263 aaKnown RBP23.8■■□□□ 1.4
TRIM28-201ENST00000253024 SEMA6BQ9H3T3 888 aa23.8■■□□□ 1.4
TRIM28-201ENST00000253024 CD209Q9NNX6 404 aa23.8■■□□□ 1.4
TRIM28-201ENST00000253024 THRAP3Q9Y2W1 955 aaKnown RBP23.8■■□□□ 1.4
TRIM28-201ENST00000253024 A0A1B0GUL6 1792 aa23.8■■□□□ 1.4
TRIM28-201ENST00000253024 FLT1P17948 1338 aa23.8■■□□□ 1.4
TRIM28-201ENST00000253024 IPO7O95373 1038 aaKnown RBP23.79■■□□□ 1.4
TRIM28-201ENST00000253024 DPP8Q6V1X1 898 aaPredicted RBP23.79■■□□□ 1.4
TRIM28-201ENST00000253024 KCTD1Q719H9 257 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 ZNF804AQ7Z570 1209 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 ZNF507Q8TCN5 953 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 ZNHIT6Q9NWK9 470 aaKnown RBP23.79■■□□□ 1.4
TRIM28-201ENST00000253024 COL16A1Q07092 1604 aaPredicted RBP23.79■■□□□ 1.4
TRIM28-201ENST00000253024 COL14A1Q05707 1796 aaKnown RBP23.79■■□□□ 1.4
TRIM28-201ENST00000253024 MYMKA6NI61 221 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 NCK2O43639 380 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 CASP8Q14790 479 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 DEF6Q9H4E7 631 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 C6orf50Q9HD87 102 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 CCDC66A2RUB6 948 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 PDE2AO00408 941 aaPredicted RBP23.79■■□□□ 1.4
TRIM28-201ENST00000253024 RHOBTB3O94955 611 aa23.79■■□□□ 1.4
TRIM28-201ENST00000253024 SAMD1Q6SPF0 538 aaPredicted RBP23.79■■□□□ 1.4
TRIM28-201ENST00000253024 BUB1O43683 1085 aa23.78■■□□□ 1.4
TRIM28-201ENST00000253024 GNAQP50148 359 aa23.78■■□□□ 1.4
TRIM28-201ENST00000253024 SLC7A5Q01650 507 aa23.78■■□□□ 1.4
TRIM28-201ENST00000253024 TRAPPC3LQ5T215 181 aa23.78■■□□□ 1.4
TRIM28-201ENST00000253024 ZNF219Q9P2Y4 722 aaPredicted RBP23.78■■□□□ 1.4
TRIM28-201ENST00000253024 NPHP3-ACAD11A0A0J9YXS1 232 aa23.78■■□□□ 1.4
TRIM28-201ENST00000253024 MOCS3O95396 460 aa23.78■■□□□ 1.4
TRIM28-201ENST00000253024 CALCRLQ16602 461 aa23.78■■□□□ 1.4
TRIM28-201ENST00000253024 SAR1BQ9Y6B6 198 aa23.78■■□□□ 1.4
TRIM28-201ENST00000253024 ROBO1Q9Y6N7 1651 aa23.78■■□□□ 1.4
TRIM28-201ENST00000253024 ZNF263O14978 683 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 MYBL2P10244 700 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 AKR1B1P15121 316 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 GRAPQ13588 217 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 RRAGAQ7L523 313 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 GRAPLQ8TC17 118 aaPredicted RBP23.77■■□□□ 1.4
TRIM28-201ENST00000253024 SNX29Q8TEQ0 813 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 CCDC42Q96M95 316 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 DOK7Q18PE1 504 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 FOXR1Q6PIV2 292 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 CALML4Q96GE6 196 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 CAPN11Q9UMQ6 739 aa23.77■■□□□ 1.4
TRIM28-201ENST00000253024 DNM2P50570 870 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 BRD3Q15059 726 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 HDXQ7Z353 690 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 FGFBP2Q9BYJ0 223 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 CAPN6Q9Y6Q1 641 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 PDS5AQ29RF7 1337 aaKnown RBP23.76■■□□□ 1.39
TRIM28-201ENST00000253024 CCNE1P24864 410 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 AMPD2Q01433 879 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.76■■□□□ 1.39
TRIM28-201ENST00000253024 TCP10Q12799 353 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 ECM1Q16610 540 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 MIIPQ5JXC2 388 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 HDAC7Q8WUI4 952 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 ZMYND12Q9H0C1 365 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 L1RE1Q9UN81 338 aa23.76■■□□□ 1.39
TRIM28-201ENST00000253024 ERLIN1O75477 346 aa23.75■■□□□ 1.39
TRIM28-201ENST00000253024 EEF1GP26641 437 aaKnown RBP23.75■■□□□ 1.39
TRIM28-201ENST00000253024 TMED8Q6PL24 325 aaPredicted RBP23.75■■□□□ 1.39
TRIM28-201ENST00000253024 SLC30A10Q6XR72 485 aa23.75■■□□□ 1.39
TRIM28-201ENST00000253024 CCSER1Q9C0I3 900 aa23.75■■□□□ 1.39
TRIM28-201ENST00000253024 POLLQ9UGP5 575 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms