RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 MKRN1Q9UHC7 482 aaKnown RBP13.3□□□□□ -0.28
USHBP1-201ENST00000252597 TRAF5O00463 557 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 MAGEA9P43362 315 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 PRPF4BQ13523 1007 aaKnown RBP13.3□□□□□ -0.28
USHBP1-201ENST00000252597 CFAP58Q5T655 872 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 TCERG1LQ5VWI1 586 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 FRMPD2Q68DX3 1309 aaPredicted RBP13.3□□□□□ -0.28
USHBP1-201ENST00000252597 SH3RF1Q7Z6J0 888 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 CELF1Q92879 486 aaKnown RBP13.3□□□□□ -0.28
USHBP1-201ENST00000252597 KRT12Q99456 494 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 FAM169AQ9Y6X4 670 aa13.3□□□□□ -0.28
USHBP1-201ENST00000252597 F8W031 263 aaPredicted RBP13.29□□□□□ -0.28
USHBP1-201ENST00000252597 CALM1P0DP23 149 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 CALM2P0DP24 149 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 CALM3P0DP25 149 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 MCM3P25205 808 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 KIF11P52732 1056 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 GUCY1A3Q02108 690 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 ERFEQ4G0M1 354 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 CCNI2Q6ZMN8 369 aaPredicted RBP13.29□□□□□ -0.28
USHBP1-201ENST00000252597 C3orf67Q6ZVT6 689 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 P2RX5Q93086 422 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 TMEM260Q9NX78 707 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 CNTNAP5Q8WYK1 1306 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 FGFR2P21802 821 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 CALML3P27482 149 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 INPP5BP32019 993 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 AMPD2Q01433 879 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 OTUD6BQ8N6M0 293 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 CALML4Q96GE6 196 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 PCDHA13Q9Y5I0 950 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 LRRC53A6NM62 1247 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 IRAK1P51617 712 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 NAA35Q5VZE5 725 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 AMOTL1Q8IY63 956 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 MARCH10Q8NA82 808 aaPredicted RBP13.29□□□□□ -0.28
USHBP1-201ENST00000252597 SPATA4Q8NEY3 305 aa13.29□□□□□ -0.28
USHBP1-201ENST00000252597 SEPT11Q9NVA2 429 aaKnown RBP13.29□□□□□ -0.28
USHBP1-201ENST00000252597 PLEKHG2Q9H7P9 1386 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 POTEMA6NI47 508 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 HGSO14964 777 aaPredicted RBP13.28□□□□□ -0.28
USHBP1-201ENST00000252597 VAV2P52735 878 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 SEC24CP53992 1094 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 LLGL1Q15334 1064 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 GLIS3Q8NEA6 775 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 PLA2G12BQ9BX93 195 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 KCPQ6ZWJ8 1503 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 SMCO2A6NFE2 343 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 CRKLP46109 303 aaKnown RBP13.28□□□□□ -0.28
USHBP1-201ENST00000252597 TUBB2AQ13885 445 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 TRADDQ15628 312 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 ICE2Q659A1 982 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 OR2W6PQ8NHA6 318 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 TUBB2BQ9BVA1 445 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 DCP1AQ9NPI6 582 aaPredicted RBP13.28□□□□□ -0.28
USHBP1-201ENST00000252597 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.28□□□□□ -0.281e-18■■■■■ 447.2
USHBP1-201ENST00000252597 MYO1AQ9UBC5 1043 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 CAPN11Q9UMQ6 739 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 SLC1A4P43007 532 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 POLR2FP61218 127 aaKnown RBP13.28□□□□□ -0.28
USHBP1-201ENST00000252597 PICALMQ13492 652 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 DDB1Q16531 1140 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 CLEC10AQ8IUN9 316 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 TSEN2Q8NCE0 465 aaKnown RBP13.28□□□□□ -0.28
USHBP1-201ENST00000252597 GPCPD1Q9NPB8 672 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 RBM12Q9NTZ6 932 aaKnown RBP13.28□□□□□ -0.28
USHBP1-201ENST00000252597 PSD3Q9NYI0 1048 aa13.28□□□□□ -0.28
USHBP1-201ENST00000252597 SEC63Q9UGP8 760 aaKnown RBP13.28□□□□□ -0.28
USHBP1-201ENST00000252597 KLRF2D3W0D1 207 aa13.27□□□□□ -0.28
USHBP1-201ENST00000252597 HEXIM1O94992 359 aaKnown RBP13.27□□□□□ -0.28
USHBP1-201ENST00000252597 LONP1P36776 959 aaKnown RBP13.27□□□□□ -0.28
USHBP1-201ENST00000252597 CARSP49589 748 aaKnown RBP13.27□□□□□ -0.28
USHBP1-201ENST00000252597 ZBED6P86452 979 aa13.27□□□□□ -0.28
USHBP1-201ENST00000252597 PFKFB3Q16875 520 aaPredicted RBP13.27□□□□□ -0.28
USHBP1-201ENST00000252597 UHMK1Q8TAS1 419 aaKnown RBP13.27□□□□□ -0.28
USHBP1-201ENST00000252597 COA7Q96BR5 231 aa13.27□□□□□ -0.28
USHBP1-201ENST00000252597 GOPCQ9HD26 462 aa13.27□□□□□ -0.28
USHBP1-201ENST00000252597 NNTQ13423 1086 aa13.27□□□□□ -0.29
USHBP1-201ENST00000252597 CEP85LQ5SZL2 805 aa13.27□□□□□ -0.29
USHBP1-201ENST00000252597 TADA2BQ86TJ2 420 aa13.27□□□□□ -0.29
USHBP1-201ENST00000252597 KSR1Q8IVT5 923 aa13.27□□□□□ -0.29
USHBP1-201ENST00000252597 OSBPL9Q96SU4 736 aa13.27□□□□□ -0.29
USHBP1-201ENST00000252597 ADAMTS1Q9UHI8 967 aa13.27□□□□□ -0.29
USHBP1-201ENST00000252597 PCDHA4Q9UN74 947 aa13.27□□□□□ -0.29
USHBP1-201ENST00000252597 PSMD14O00487 310 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 SEMA3EO15041 775 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 EEF1GP26641 437 aaKnown RBP13.26□□□□□ -0.29
USHBP1-201ENST00000252597 NPY5RQ15761 445 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 NAALADL2Q58DX5 795 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 CEP57Q86XR8 500 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 AP1M1Q9BXS5 423 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 FAM184BQ9ULE4 1060 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 CDHR2Q9BYE9 1310 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 LOC102724159A0A0B4J2E5 919 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 GOLGA6L10A6NI86 522 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 E7EVH7 732 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 ZNF263O14978 683 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 HIBADHP31937 336 aaKnown RBP13.26□□□□□ -0.29
USHBP1-201ENST00000252597 FUT2Q10981 343 aa13.26□□□□□ -0.29
USHBP1-201ENST00000252597 PWP2Q15269 919 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms