RNA–Protein interactions for RNA: ENSMUST00000209611.1

Sh3rf1-202, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

TSL 1 (best) BASIC

Gene Sh3rf1, Length 4,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-202ENSMUST00000209611 Brip1Q5SXJ3 1174 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Kif5bQ61768 963 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Ccdc93Q7TQK5 629 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Dnm3Q8BZ98 863 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 GrapQ9CX99 217 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Taf1dQ9D4V4 322 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Mroh8E9PYI4 1049 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Gm10378F6XQQ1 160 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Sema3fO88632 785 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Islr2Q5RKR3 745 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Mcm7Q61881 719 aaKnown RBP10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Uso1Q9Z1Z0 959 aaKnown RBP10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 GabreA2AMW3 916 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Tph1P17532 447 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Xxylt1Q3U4G3 392 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Senp6Q6P7W0 1132 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Tmem39bQ810L4 492 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Sap130Q8BIH0 1057 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Ccdc38Q8CDN8 563 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Copb1Q9JIF7 953 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Znf638Q61464 1960 aaKnown RBP10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Kcnb1Q03717 857 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Pls1Q3V0K9 630 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Tshz1Q5DTH5 1084 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Hoxa13Q62424 386 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 CbarpQ66L44 698 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Churc1Q6DG52 112 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Rexo1Q7TT28 1213 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Yars2Q8BYL4 472 aaKnown RBP10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Washc1Q8VDD8 475 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Gmcl1Q920G9 524 aa10.66□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Spocd1B1ASB6 936 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Pus7B7ZNL8 666 aaKnown RBP10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Sox5P35710 763 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Tdo2P48776 406 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Nab2Q61127 525 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Stxbp2Q64324 593 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Asnsd1Q8BFS9 627 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Scfd2Q8BTY8 684 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Znf131Q8K3J5 619 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Dppa3Q8QZY3 150 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Grpel1Q99LP6 217 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 4921524L21RikQ9D5T2 438 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Irx4Q9QY61 515 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Adamtsl1Q8BLI0 1745 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 SynrgQ5SV85 1306 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Cul4bA2A432 970 aaKnown RBP10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 NpcdF8VQB8 469 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Nedd1P33215 660 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Nf2P46662 596 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Tor1aip2Q8BYU6 502 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Defb15Q8R2I5 79 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Eps8l1Q8R5F8 716 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Q9DAQ4 598 aa10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Fxr2Q9WVR4 673 aaKnown RBP10.65□□□□□ -0.7
Sh3rf1-202ENSMUST00000209611 Pcdh11xF6ZNL5 1338 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Ddx23D3Z0M9 819 aaKnown RBP10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Apol10bG3X9K7 334 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Rnf216P58283 853 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Nlrx1Q3TL44 975 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Prr7Q3V0I2 269 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Psen2Q61144 448 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Panx2Q6IMP4 677 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Peg10Q7TN75 958 aaKnown RBP10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Trim9Q8C7M3 817 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Onecut3Q8K557 490 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Oxnad1Q8VE38 311 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Smtnl1Q99LM3 459 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Krtap5-3Q9D226 196 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 2310002L09RikQ9D7L5 217 aa10.65□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Myo1aO88329 1043 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Prpf40bQ80W14 870 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Inpp5bQ8K337 993 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Tmx1Q8VBT0 278 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Tubb4aQ9D6F9 444 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Egfl6Q9JJZ5 550 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 CatspereP0DP43 985 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Cap1P40124 474 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Gxylt1Q3UHH8 404 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 CtcfQ61164 736 aaKnown RBP10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Bank1Q80VH0 783 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Gbp7Q91Z40 638 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Ifi202Q9R002 445 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Kcng1A2BDX4 514 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Parp2O88554 559 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Irf5P56477 497 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Ripply1Q2WG77 201 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Rgl1Q60695 768 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Ovgp1Q62010 721 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Sass6Q80UK7 654 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Armc6Q8BNU0 468 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Mei4Q8BRM6 389 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Depdc1aQ8CIG0 804 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Gys2Q8VCB3 704 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Q9D5Q8 446 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Sorbs3Q9R1Z8 733 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Chd5A2A8L1 1946 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Setd4P58467 439 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 NyxP83503 476 aa10.64□□□□□ -0.71
Sh3rf1-202ENSMUST00000209611 Drc7Q6V3W6 876 aa10.64□□□□□ -0.71
Retrieved 100 of 22,080 RNA–protein pairs in 34.8 ms