RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	PWP1	P21304	576 aa	Known RBP	3.96	□□□□□ -1.78
UBX5	YDR330W	VMA16	P23968	213 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	DBF4	P32325	704 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	LTV1	P34078	463 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	MTH1	P35198	433 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	STV1	P37296	890 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	YMC2	P38087	329 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	KEL1	P38853	1164 aa	Known RBP	3.96	□□□□□ -1.78
UBX5	YDR330W	GAA1	P39012	614 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	CAJ1	P39101	391 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	AFG3	P39925	761 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	APT1	P49435	187 aa	Known RBP	3.96	□□□□□ -1.78
UBX5	YDR330W	YGR066C	P53242	292 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	CAF130	P53280	1122 aa	Predicted RBP	3.96	□□□□□ -1.78
UBX5	YDR330W	INA17	Q02888	182 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	BUD22	Q04347	519 aa	Known RBP	3.96	□□□□□ -1.78
UBX5	YDR330W	AIM33	Q04516	312 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	ESC8	Q08119	714 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	GPN2	Q08726	347 aa	Predicted RBP	3.96	□□□□□ -1.78
UBX5	YDR330W	TAF3	Q12297	353 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	AHA1	Q12449	350 aa	Known RBP	3.96	□□□□□ -1.78
UBX5	YDR330W	YJR112W-A	Q3E743	109 aa		3.96	□□□□□ -1.78
UBX5	YDR330W	OM45	P16547	393 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	KIN3	P22209	435 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	YIH1	P25637	258 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	PDB1	P32473	366 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	SOF1	P33750	489 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	RPC25	P35718	212 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	LHS1	P36016	881 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	NTR2	P36118	322 aa	Predicted RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	SRO77	P38163	1010 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	SRP72	P38688	640 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	SEC31	P38968	1273 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	TIF4631	P39935	952 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	SAP1	P39955	897 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	PHM8	P40025	321 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	MRX1	P40050	688 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	SEC9	P40357	651 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	ASG1	P40467	964 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	CCT7	P42943	550 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	SWP82	P43554	623 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	STR3	P53101	465 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	YGL117W	P53133	265 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	YGL036W	P53185	909 aa	Predicted RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	YGR117C	P53270	476 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	SUN4	P53616	420 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	3.95	□□□□□ -1.78	not detected
UBX5	YDR330W	TRM44	Q02648	567 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	YMR155W	Q03795	547 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	SXM1	Q04175	944 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	ARG7	Q04728	441 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	YLR352W	Q06479	807 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	YEH1	Q07804	573 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	HXK2	P04807	486 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.95	□□□□□ -1.78	not detected
UBX5	YDR330W	HOM3	P10869	527 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	PDX1	P16451	410 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	SPO12	P17123	173 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	HPR1	P17629	752 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	YSP3	P25036	478 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	RPC53	P25441	422 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	CDC60	P26637	1090 aa	Known RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	ORC2	P32833	620 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	UBP11	P36026	717 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	UBP13	P38187	747 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	NDT80	P38830	627 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	MIT1	P40002	666 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	SHQ1	P40486	507 aa	Predicted RBP	3.95	□□□□□ -1.78
UBX5	YDR330W	STB4	P50104	949 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	FMS1	P50264	508 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	SOL4	P53315	255 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	BOP3	P53958	396 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	RAD33	Q04231	177 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	SML1	Q04964	104 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	FUS2	Q05670	677 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	YLH47	Q06493	454 aa		3.95	□□□□□ -1.78
UBX5	YDR330W	YMR084W	A2P2R3	262 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	ILV1	P00927	576 aa	Known RBP	3.94	□□□□□ -1.78
UBX5	YDR330W	ILV2	P07342	687 aa	Known RBP	3.94	□□□□□ -1.78
UBX5	YDR330W	KRS1	P15180	591 aa	Known RBP	3.94	□□□□□ -1.78
UBX5	YDR330W	SIP3	P38717	1229 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	MUP3	P38734	546 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	CIN4	P39110	191 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	LSM5	P40089	93 aa	Known RBP	3.94	□□□□□ -1.78
UBX5	YDR330W	BUR6	P40096	142 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	SDS3	P40505	327 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	EFM4	P40516	257 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	TOS3	P43637	560 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	ROK1	P45818	564 aa	Predicted RBP	3.94	□□□□□ -1.78
UBX5	YDR330W	ASN1	P49089	572 aa	Known RBP	3.94	□□□□□ -1.78
UBX5	YDR330W	VID30	P53076	958 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	LCL3	P53153	274 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	MAL13	P53338	473 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	IST1	P53843	298 aa	Predicted RBP	3.94	□□□□□ -1.78
UBX5	YDR330W	PGA2	P53903	129 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	YNL058C	P53947	316 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	SEC5	P89102	971 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	RSM28	Q03430	361 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	VAC14	Q06708	880 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	PLP2	Q12017	286 aa		3.94	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 70.2 ms