RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 C11orf74Q86VG3 221 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 FTOQ9C0B1 505 aaKnown RBP eCLIP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CARD9Q9H257 536 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 KRT75O95678 551 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CDH3P22223 829 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 ZBTB41Q5SVQ8 909 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 NUGGCQ68CJ6 796 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 HOMER1Q86YM7 354 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 MAP7D3Q8IWC1 876 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 MDM1Q8TC05 714 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CCHCR1Q8TD31 782 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 OLA1Q9NTK5 396 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 MYH7BA7E2Y1 1941 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 PDHBP11177 359 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 GNL1P36915 607 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 TSTA3Q13630 321 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 ITGA7Q13683 1181 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 COL9A2Q14055 689 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CAVIN1Q6NZI2 390 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 NCCRP1Q6ZVX7 275 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 TCP11L1Q9NUJ3 509 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 URB1O60287 2271 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 KIF1BO60333 1816 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 IRS4O14654 1257 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CETN3O15182 167 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 SEMA3DO95025 777 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 TRIM25Q14258 630 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 IYDQ6PHW0 289 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 TSPYL4Q9UJ04 414 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 GTF2A1LQ9UNN4 478 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 NACAE9PAV3 2078 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 BTBD11A6QL63 1104 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 INO80B-WBP1J3KQ70 363 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 TGDSO95455 350 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 PRKACAP17612 351 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 EXOC4Q96A65 974 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 BBS2Q9BXC9 721 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 SEC16AO15027 2179 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 NVLO15381 856 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 SNX4O95219 450 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 IFNB1P01574 187 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 MLLT3P42568 568 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 ARSHQ5FYA8 562 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 MIEF2Q96C03 454 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 A0A0B4J203 849 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 EBAG9O00559 213 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 TP73O15350 636 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 KCNQ3O43525 872 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ARIH2O95376 493 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 NXNQ6DKJ4 435 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 FIP1L1Q6UN15 594 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 LARGE2Q8N3Y3 721 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 TEKT4Q8WW24 435 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 MRPL39Q9NYK5 338 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CPA1P15085 419 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 HSPA6P17066 643 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 NCBP1Q09161 790 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 IFIT5Q13325 482 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 FAM189A2Q15884 450 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 DDX18Q9NVP1 670 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CPSF3Q9UKF6 684 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 E2F3O00716 465 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 GUCY1B2O75343 617 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 RHOBTB1O94844 696 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 RPN1P04843 607 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 EEPD1Q7L9B9 569 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC77Q9BR77 488 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ARHGEF38Q9NXL2 777 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 HIVEP3Q5T1R4 2406 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 LRRC72A6NJI9 287 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 STARD3NLO95772 234 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ENDOUP21128 410 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 TARSP26639 723 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ACAP2Q15057 778 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 C17orf53Q8N3J3 647 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 TOR1AIP2Q8NFQ8 470 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ATP13A3Q9H7F0 1226 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 FAM8A1Q9UBU6 413 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 PLCL2Q9UPR0 1127 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 RRP7AQ9Y3A4 280 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 E2F8A0AVK6 867 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ARHGEF37A1IGU5 675 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 B4DLN1 442 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ENC1O14682 589 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 HNRNPRO43390 633 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 MCM5P33992 734 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 MRPS15P82914 257 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 STAG1Q8WVM7 1258 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 WDR60Q8WVS4 1066 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 SMG7Q92540 1137 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 WDR6Q9NNW5 1121 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 SYCE3A1L190 88 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 SCAMP1O15126 338 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 PAPOLAP51003 745 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ARID5AQ03989 594 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 KRT32Q14532 448 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CORO6Q6QEF8 472 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 MRPL46Q9H2W6 279 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 C12orf4Q9NQ89 552 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ANO10Q9NW15 660 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms