RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CAPN7Q9Y6W3 813 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 GNAT3A8MTJ3 354 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 SLC4A1P02730 911 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 GNA11P29992 359 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 HDAC1Q13547 482 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 MAGEB6Q8N7X4 407 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ZSCAN1Q8NBB4 408 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 PPP1R13BQ96KQ4 1090 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TCF25Q9BQ70 676 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 RMND1Q9NWS8 449 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 COPG1Q9Y678 874 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 EMSYQ7Z589 1322 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 WDR64B1ANS9 1081 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 WBP4O75554 376 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 EEF1DP29692 281 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 NUP62P37198 522 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 RASSF2P50749 326 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 RAD51Q06609 339 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 CC2D2BQ6DHV5 1058 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC13Q8IYE1 715 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 REM2Q8IYK8 340 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 GHRLQ9UBU3 117 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 BTBD11A6QL63 1104 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 GSNP06396 782 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 NEK2P51955 445 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 USP14P54578 494 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 SV2CQ496J9 727 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC177Q9NQR7 707 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 H2AFY2Q9P0M6 372 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 DISP3Q9P2K9 1392 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 POLA1P09884 1462 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 FAM47E-STBD1D6RA91 191 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ZBED4O75132 1171 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 MTIF2P46199 727 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ESRRGP62508 458 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 DYNC1I2Q13409 638 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 AKAP4Q5JQC9 854 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 BTBD8Q5XKL5 378 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 GRAMD4Q6IC98 578 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 PPP1R2P3Q6NXS1 205 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 EID3Q8N140 333 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 GIMAP8Q8ND71 665 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 KATNAL1Q9BW62 490 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 SCUBE2Q9NQ36 999 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 SELENONQ9NZV5 590 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 MTRF1LQ9UGC7 380 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 AGTPBP1Q9UPW5 1226 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 SPACA6W5XKT8 324 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 FAM135AQ9P2D6 1515 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 CFAP43Q8NDM7 1665 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 PPFIA4O75335 1185 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 PDE6CP51160 858 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 DPP9Q86TI2 863 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 NBPF5PQ86XG9 351 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 IFNL3Q8IZI9 196 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 GPR161Q8N6U8 529 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ANLNQ9NQW6 1124 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 IPPQ9Y573 584 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 APOA4P06727 396 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF18P17022 549 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 NMIQ13287 307 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 NLRX1Q86UT6 975 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF366Q8N895 744 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 COQ7Q99807 217 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 MMTAG2Q9BU76 263 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ORC6Q9Y5N6 252 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 HEATR5AQ86XA9 2040 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TTLL8A6PVC2 850 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 JAK1P23458 1154 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 COPB1P53618 953 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 MRPL28Q13084 256 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ARHGAP27Q6ZUM4 889 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ARMCX2Q7L311 632 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 FAM186BQ8IYM0 893 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 THEM5Q8N1Q8 247 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 URGCPQ8TCY9 931 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 GANCQ8TET4 914 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TSC22D3Q99576 134 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 SH3GL2Q99962 352 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 NHEJ1Q9H9Q4 299 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 LMBRD1Q9NUN5 540 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 CTTNBP2NLQ9P2B4 639 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 NFKBIL1Q9UBC1 381 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TET1Q8NFU7 2136 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 KBTBD13C9JR72 458 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 H7C0S8 307 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 MTSS1O43312 755 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 DNAJC6O75061 913 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 UQCRFS1P1P0C7P4 283 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 CHRNB4P30926 498 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 COPB2P35606 906 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 PLCL1Q15111 1095 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TCERG1LQ5VWI1 586 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 KRT40Q6A162 431 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 GADL1Q6ZQY3 521 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TEX2Q8IWB9 1127 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TRIM42Q8IWZ5 723 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 RAET1EQ8TD07 263 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms