RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TTF1Q15361 905 aaPredicted RBP19.6■□□□□ 0.73
CLN3-264ENST00000637985 CEP85Q6P2H3 762 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 SPRED2Q7Z698 418 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 FAM133AQ8N9E0 248 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 CHST13Q8NET6 341 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 AP5M1Q9H0R1 490 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 RAVER2Q9HCJ3 691 aaKnown RBP19.6■□□□□ 0.73
CLN3-264ENST00000637985 ATP8A2Q9NTI2 1148 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 TRMT13Q9NUP7 481 aaKnown RBP19.6■□□□□ 0.73
CLN3-264ENST00000637985 COL4A4P53420 1690 aaPredicted RBP19.59■□□□□ 0.73
CLN3-264ENST00000637985 DYNC1LI2O43237 492 aaPredicted RBP19.59■□□□□ 0.73
CLN3-264ENST00000637985 PRKAB2O43741 272 aa19.59■□□□□ 0.73
CLN3-264ENST00000637985 ZBED4O75132 1171 aa19.59■□□□□ 0.73
CLN3-264ENST00000637985 SUPT20HL2P0C7V6 817 aa19.59■□□□□ 0.73
CLN3-264ENST00000637985 SMPD1P17405 629 aa19.59■□□□□ 0.73
CLN3-264ENST00000637985 LEXMQ3ZCV2 418 aa19.59■□□□□ 0.73
CLN3-264ENST00000637985 UBE2ZQ9H832 354 aaPredicted RBP19.59■□□□□ 0.73
CLN3-264ENST00000637985 ARMT1Q9H993 441 aa19.59■□□□□ 0.73
CLN3-264ENST00000637985 SLC38A10Q9HBR0 1119 aa19.59■□□□□ 0.73
CLN3-264ENST00000637985 Q9Y3F1 56 aa19.59■□□□□ 0.73
CLN3-264ENST00000637985 F5H6K3 240 aa19.58■□□□□ 0.72
CLN3-264ENST00000637985 RFC2P35250 354 aa19.58■□□□□ 0.72
CLN3-264ENST00000637985 KLRC3Q07444 240 aa19.58■□□□□ 0.72
CLN3-264ENST00000637985 CSPP1Q1MSJ5 1256 aa19.58■□□□□ 0.72
CLN3-264ENST00000637985 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.58■□□□□ 0.72
CLN3-264ENST00000637985 TNKSO95271 1327 aa19.57■□□□□ 0.72
CLN3-264ENST00000637985 USP17L12C9JPN9 530 aa19.57■□□□□ 0.72
CLN3-264ENST00000637985 USP17L21D6R901 530 aa19.57■□□□□ 0.72
CLN3-264ENST00000637985 NDUFB10O96000 172 aa19.57■□□□□ 0.72
CLN3-264ENST00000637985 SSTR3P32745 418 aaPredicted RBP19.57■□□□□ 0.72
CLN3-264ENST00000637985 OAZ1P54368 228 aa19.57■□□□□ 0.72
CLN3-264ENST00000637985 ERC1Q8IUD2 1116 aa19.57■□□□□ 0.72
CLN3-264ENST00000637985 GREB1LQ9C091 1923 aaPredicted RBP19.57■□□□□ 0.72
CLN3-264ENST00000637985 ZNF318Q5VUA4 2279 aa19.56■□□□□ 0.72
CLN3-264ENST00000637985 SOWAHBA6NEL2 793 aa19.56■□□□□ 0.72
CLN3-264ENST00000637985 ASB14A6NK59 587 aa19.56■□□□□ 0.72
CLN3-264ENST00000637985 IQSEC1Q6DN90 963 aa19.56■□□□□ 0.72
CLN3-264ENST00000637985 TET1Q8NFU7 2136 aa19.56■□□□□ 0.72
CLN3-264ENST00000637985 PDGFCQ9NRA1 345 aa19.56■□□□□ 0.72
CLN3-264ENST00000637985 RCAN3Q9UKA8 241 aa19.56■□□□□ 0.72
CLN3-264ENST00000637985 DDX19BQ9UMR2 479 aa19.56■□□□□ 0.72
CLN3-264ENST00000637985 CTDP1Q9Y5B0 961 aaPredicted RBP19.56■□□□□ 0.72
CLN3-264ENST00000637985 POTEB3A0JP26 581 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 IQCF3P0C7M6 154 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 IL9P15248 144 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 HSP90AB4PQ58FF6 505 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 TMEM63BQ5T3F8 832 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 TAPT1Q6NXT6 567 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 POTEBQ6S5H4 581 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 AACSQ86V21 672 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 AMOTL1Q8IY63 956 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 GDPD5Q8WTR4 605 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 KIFC2Q96AC6 838 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 CHMP4BQ9H444 224 aaKnown RBP19.55■□□□□ 0.72
CLN3-264ENST00000637985 NYAP2Q9P242 653 aa19.55■□□□□ 0.72
CLN3-264ENST00000637985 LCHNA4D1U4 455 aa19.54■□□□□ 0.72
CLN3-264ENST00000637985 PITPNM1O00562 1244 aa19.54■□□□□ 0.72
CLN3-264ENST00000637985 BAIAP3O94812 1187 aa19.54■□□□□ 0.72
CLN3-264ENST00000637985 MBD4O95243 580 aa19.54■□□□□ 0.72
CLN3-264ENST00000637985 KCNA5P22460 613 aa19.54■□□□□ 0.72
CLN3-264ENST00000637985 RPAP2Q8IXW5 612 aaPredicted RBP19.54■□□□□ 0.72
CLN3-264ENST00000637985 SUGCTQ9HAC7 445 aa19.54■□□□□ 0.72
CLN3-264ENST00000637985 A1CFQ9NQ94 594 aaKnown RBP19.54■□□□□ 0.72
CLN3-264ENST00000637985 PTPRSQ13332 1948 aa19.54■□□□□ 0.72
CLN3-264ENST00000637985 GRXCR2A6NFK2 248 aa19.53■□□□□ 0.72
CLN3-264ENST00000637985 DCXO43602 365 aa19.53■□□□□ 0.72
CLN3-264ENST00000637985 PTCRAQ6ISU1 281 aaPredicted RBP19.53■□□□□ 0.72
CLN3-264ENST00000637985 FTOQ9C0B1 505 aaKnown RBP eCLIP19.53■□□□□ 0.72
CLN3-264ENST00000637985 ACAD9Q9H845 621 aa19.53■□□□□ 0.72
CLN3-264ENST00000637985 HOMER2Q9NSB8 354 aa19.53■□□□□ 0.72
CLN3-264ENST00000637985 FEM1BQ9UK73 627 aa19.53■□□□□ 0.72
CLN3-264ENST00000637985 EXOC6BQ9Y2D4 811 aa19.53■□□□□ 0.72
CLN3-264ENST00000637985 DDX49Q9Y6V7 483 aaKnown RBP19.53■□□□□ 0.72
CLN3-264ENST00000637985 USP34Q70CQ2 3546 aa19.53■□□□□ 0.72
CLN3-264ENST00000637985 GOLIM4O00461 696 aa19.52■□□□□ 0.72
CLN3-264ENST00000637985 SLFNL1Q499Z3 407 aa19.52■□□□□ 0.72
CLN3-264ENST00000637985 CTR9Q6PD62 1173 aa19.52■□□□□ 0.72
CLN3-264ENST00000637985 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.52■□□□□ 0.72
CLN3-264ENST00000637985 ZBTB40Q9NUA8 1239 aa19.52■□□□□ 0.72
CLN3-264ENST00000637985 COG6Q9Y2V7 657 aa19.52■□□□□ 0.72
CLN3-264ENST00000637985 TANC1Q9C0D5 1861 aa19.52■□□□□ 0.71
CLN3-264ENST00000637985 ZNF536O15090 1300 aa19.51■□□□□ 0.71
CLN3-264ENST00000637985 HMMRO75330 724 aa19.51■□□□□ 0.71
CLN3-264ENST00000637985 PURAQ00577 322 aaKnown RBP19.51■□□□□ 0.71
CLN3-264ENST00000637985 EEPD1Q7L9B9 569 aa19.51■□□□□ 0.71
CLN3-264ENST00000637985 FBXO16Q8IX29 292 aaPredicted RBP19.51■□□□□ 0.71
CLN3-264ENST00000637985 RETREG2Q8NC44 543 aa19.51■□□□□ 0.71
CLN3-264ENST00000637985 POLR3EQ9NVU0 708 aa19.51■□□□□ 0.71
CLN3-264ENST00000637985 TRIOO75962 3097 aa19.51■□□□□ 0.71
CLN3-264ENST00000637985 RASA1P20936 1047 aa19.5■□□□□ 0.71
CLN3-264ENST00000637985 ADD2P35612 726 aa19.5■□□□□ 0.71
CLN3-264ENST00000637985 KCNJ6P48051 423 aa19.5■□□□□ 0.71
CLN3-264ENST00000637985 ERVK-21P61565 698 aa19.5■□□□□ 0.71
CLN3-264ENST00000637985 PUS10Q3MIT2 529 aaKnown RBP19.5■□□□□ 0.71
CLN3-264ENST00000637985 DUSP28Q4G0W2 176 aa19.5■□□□□ 0.71
CLN3-264ENST00000637985 DDRGK1Q96HY6 314 aa19.5■□□□□ 0.71
CLN3-264ENST00000637985 SCN10AQ9Y5Y9 1956 aa19.5■□□□□ 0.71
CLN3-264ENST00000637985 FDX1P10109 184 aa19.49■□□□□ 0.71
CLN3-264ENST00000637985 WDR5P61964 334 aaKnown RBP19.49■□□□□ 0.71
CLN3-264ENST00000637985 KIAA1211Q6ZU35 1233 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms