RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NUTM2AQ8IVF1 878 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 KCNG4Q8TDN1 519 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 OTUD7AQ8TE49 926 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 BRF1Q92994 677 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 DDX23Q9BUQ8 820 aaKnown RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 RAB17Q9H0T7 212 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 TAF1DQ9H5J8 278 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 CPLX1O14810 134 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 NVLO15381 856 aaKnown RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 ACADSP16219 412 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 KRT4P19013 534 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 LMNB1P20700 586 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SP100P23497 879 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 TUFMP49411 452 aaKnown RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 TUBA4AP68366 448 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 MTMR3Q13615 1198 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 KPNB1Q14974 876 aaKnown RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 ME3Q16798 604 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 CCSAPQ6IQ19 270 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 PPP1R21Q6ZMI0 780 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 RUFY3Q7L099 469 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 CHMP6Q96FZ7 201 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 DYDC2Q96IM9 177 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 KDM5DQ9BY66 1539 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SAMD9Q5K651 1589 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 GRIN2DO15399 1336 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 ASXL1Q8IXJ9 1541 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 ADCY3O60266 1144 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 IDO1P14902 403 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 ATP6V1C1P21283 382 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 SMARCA1P28370 1054 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 BASP1P80723 227 aaKnown RBP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 MCL1Q07820 350 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 RNF220Q5VTB9 566 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 NLRP9Q7RTR0 991 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 LRRC8CQ8TDW0 803 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 UBLCP1Q8WVY7 318 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 RAPGEF4Q8WZA2 1011 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 NECTIN2Q92692 538 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 ARL8AQ96BM9 186 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 NUDCD1Q96RS6 583 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 SPZ1Q9BXG8 430 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 HAUS4Q9H6D7 363 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 DDX21Q9NR30 783 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 TXLNGQ9NUQ3 528 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 PCMTD2Q9NV79 361 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 SNX14Q9Y5W7 946 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 A0A087WWV3 80 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 TRIM64CA6NLI5 447 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 KRT75O95678 551 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 FGFR1OPO95684 399 aaKnown RBP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 VPS41P49754 854 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 BIRC3Q13489 604 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 UHRF1BP1Q6BDS2 1440 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 USHBP1Q8N6Y0 703 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 ARHGEF2Q92974 986 aaKnown RBP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 SKA1Q96BD8 255 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 KRT23Q9C075 422 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 WWC3Q9ULE0 1092 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 TTC21AQ8NDW8 1320 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 IGF2BP3O00425 579 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 DIAPH1O60610 1272 aaKnown RBP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 PEX14O75381 377 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 ATICP31939 592 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 CTNNA1P35221 906 aaKnown RBP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 KRT71Q3SY84 523 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 HS2ST1Q7LGA3 356 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 CCDC85AQ96PX6 553 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-216ENST00000637968 IL1RAPL1Q9NZN1 696 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 NDUFA13Q9P0J0 144 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 LRCH1Q9Y2L9 728 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 ADGRG1Q9Y653 693 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 FANCAO15360 1455 aa6.28□□□□□ -1.4
SCN1A-216ENST00000637968 SOWAHDA6NJG2 315 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 MSH2P43246 934 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 SYKP43405 635 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 MTHFSP49914 203 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 KIF5AQ12840 1032 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 ADAM9Q13443 819 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 SAFBQ15424 915 aaKnown RBP eCLIP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 TRPM8Q7Z2W7 1104 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 C11orf74Q86VG3 221 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 PLAAQ9Y263 795 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 COL17A1Q9UMD9 1497 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 H0Y3Z8 333 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 BIRC5O15392 142 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 UPP2O95045 317 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 HSPA9P38646 679 aaKnown RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 CETN2P41208 172 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 NLRP6P59044 892 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 PPP2R2AP63151 447 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 KAZNQ674X7 775 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 HINFPQ9BQA5 517 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 GOLPH3LQ9H4A5 285 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 ABCF3Q9NUQ8 709 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 KLHL14Q9P2G3 628 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 DNM1LO00429 736 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 FYB1O15117 783 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 WDR46O15213 610 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms