RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 KIAA0907Q7Z7F0 614 aaPredicted RBP3.61□□□□□ -1.83
VIM-210ENST00000637053 CATIPQ7Z7H3 387 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 C14orf80Q86SX3 495 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 LCA5Q86VQ0 697 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 TTC30AQ86WT1 665 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 VPS37DQ86XT2 251 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 JAMLQ86YT9 394 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 SPICE1Q8N0Z3 855 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 ABHD4Q8TB40 342 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 CFAP53Q96M91 514 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 SLC26A8Q96RN1 970 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 SERINC2Q96SA4 455 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 SRPK1Q96SB4 655 aaKnown RBP3.61□□□□□ -1.83
VIM-210ENST00000637053 SRRTQ9BXP5 876 aaKnown RBP3.61□□□□□ -1.83
VIM-210ENST00000637053 XYLT2Q9H1B5 865 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 RANBP17Q9H2T7 1088 aaKnown RBP3.61□□□□□ -1.83
VIM-210ENST00000637053 KANSL2Q9H9L4 492 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 CD248Q9HCU0 757 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 RNF19AQ9NV58 838 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 VTI1BQ9UEU0 232 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 DDX41Q9UJV9 622 aaKnown RBP3.61□□□□□ -1.83
VIM-210ENST00000637053 ZNF652Q9Y2D9 606 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 TRIM64CA6NLI5 447 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 FIBPO43427 364 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 ORC4O43929 436 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 FZD6O60353 706 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 ALDH1L1O75891 902 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 GSTP1P09211 210 aaKnown RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 NAT2P11245 290 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 NAT1P18440 290 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 LMNB1P20700 586 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 CASQ1P31415 396 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 NTF4P34130 210 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 ITGAEP38570 1179 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 TSPAN7P41732 249 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 CHMP4BP1P59074 171 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 RACK1P63244 317 aaKnown RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 ARHGAP4P98171 946 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 DCTN1Q14203 1278 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 TTF1Q15361 905 aaPredicted RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 ZNF394Q53GI3 561 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 FAM133BQ5BKY9 247 aaKnown RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 HYIQ5T013 277 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 FAM83BQ5T0W9 1011 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 KIAA0319Q5VV43 1072 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 CCDC73Q6ZRK6 1079 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 PDZD3Q86UT5 571 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 SMAP1Q8IYB5 467 aaPredicted RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 ZNF654Q8IZM8 581 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 PPHLN1Q8NEY8 458 aaKnown RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 BAHD1Q8TBE0 780 aaPredicted RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 SH3TC2Q8TF17 1288 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 ATRIPQ8WXE1 791 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 APPBP2Q92624 585 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 BORCS6Q96GS4 357 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 PAWRQ96IZ0 340 aaKnown RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 GPR101Q96P66 508 aaPredicted RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 DUSP9Q99956 384 aaKnown RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 SELENOOQ9BVL4 669 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 PDGFDQ9GZP0 370 aaPredicted RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 MCOLN1Q9GZU1 580 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 SSU72Q9NP77 194 aaKnown RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 NGRNQ9NPE2 291 aaKnown RBP3.6□□□□□ -1.83
VIM-210ENST00000637053 KMT5AQ9NQR1 393 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 KRT82Q9NSB4 513 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 LUZP4Q9P127 313 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 IP6K2Q9UHH9 426 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 GTF2A1LQ9UNN4 478 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 PCDHGB7Q9Y5F8 929 aa3.6□□□□□ -1.83
VIM-210ENST00000637053 MYOCOSA0A1B0GUC4 107 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 ESYT3A0FGR9 886 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 SHTN1A0MZ66 631 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 GNAT3A8MTJ3 354 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 IPO5O00410 1097 aaKnown RBP3.59□□□□□ -1.83
VIM-210ENST00000637053 CHL1O00533 1208 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 PES1O00541 588 aaKnown RBP3.59□□□□□ -1.83
VIM-210ENST00000637053 DIAPH1O60610 1272 aaKnown RBP3.59□□□□□ -1.83
VIM-210ENST00000637053 PRPF40AO75400 957 aaKnown RBP3.59□□□□□ -1.83
VIM-210ENST00000637053 TCEA3O75764 348 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 HNRNPCP07910 306 aaKnown RBP eCLIP3.59□□□□□ -1.83
VIM-210ENST00000637053 ATF4P18848 351 aaPredicted RBP3.59□□□□□ -1.83
VIM-210ENST00000637053 HOXC13P31276 330 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 PIK3CAP42336 1068 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 CD151P48509 253 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 ZNF131P52739 623 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 ZNF132P52740 706 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 DLG4P78352 724 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 HMGN5P82970 282 aaKnown RBP3.59□□□□□ -1.83
VIM-210ENST00000637053 DAB2P98082 770 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 FMR1Q06787 632 aaKnown RBP eCLIP3.59□□□□□ -1.83
VIM-210ENST00000637053 EHHADHQ08426 723 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 E2F5Q15329 346 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 RALGPS1Q5JS13 557 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 SPECC1Q5M775 1068 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 TAF3Q5VWG9 929 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 ANO1Q5XXA6 986 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 KLHL10Q6JEL2 608 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 C16orf54Q6UWD8 224 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 CPXCR1Q8N123 301 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 GJD3Q8N144 294 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 353 ms