RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ARMT1Q9H993 441 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 PIH1D3Q9NQM4 214 aaKnown RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 FBXO2Q9UK22 296 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-214ENST00000637038 THSD7BQ9C0I4 1608 aa4.47□□□□□ -1.69
SCN1A-214ENST00000637038 KRT86O43790 486 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 COL9A1P20849 921 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 CDC27P30260 824 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 CYP2C19P33261 490 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 AFMP43652 599 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 AMPD3Q01432 767 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 PDE4BQ07343 736 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 PPARAQ07869 468 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 FKBP15Q5T1M5 1219 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 WWC2Q6AWC2 1192 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 DZIP3Q86Y13 1208 aaKnown RBP4.46□□□□□ -1.69
SCN1A-214ENST00000637038 DNAJC10Q8IXB1 793 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 SLC4A9Q96Q91 983 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 CRNKL1Q9BZJ0 848 aaKnown RBP4.46□□□□□ -1.69
SCN1A-214ENST00000637038 TSGA10Q9BZW7 698 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 GREM2Q9H772 168 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 MAGEF1Q9HAY2 307 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 MED4Q9NPJ6 270 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 PPP2R3BQ9Y5P8 575 aa4.46□□□□□ -1.69
SCN1A-214ENST00000637038 BICDL2A1A5D9 508 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 VWA3AA6NCI4 1184 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 PRPF3O43395 683 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 RANBP6O60518 1105 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 USO1O60763 962 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 MFAP3LO75121 409 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 PHKA1P46020 1223 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 LMAN1P49257 510 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 ADKP55263 362 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 CTDSPL2Q05D32 466 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 TBX2Q13207 712 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 SPA17Q15506 151 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 SPDYE1Q8NFV5 336 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 GOLGA5Q8TBA6 731 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 CPLX3Q8WVH0 158 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 RUFY1Q96T51 708 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 GAS2L1Q99501 681 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 CRACR2AQ9BSW2 395 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 ZNF287Q9HBT7 754 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 ZFYVE28Q9HCC9 887 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 LZTFL1Q9NQ48 299 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 PSD3Q9NYI0 1048 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 ZSWIM5Q9P217 1185 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 RWDD2AQ9UIY3 292 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 KCNJ14Q9UNX9 436 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 FHOD1Q9Y613 1164 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 GOLGB1Q14789 3259 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 CCDC194A0A1B0GVG4 234 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 ZNF18P17022 549 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 LONP1P36776 959 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 IL6STP40189 918 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 STAT6P42226 847 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 SCARF1Q14162 830 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 NTRK3Q16288 839 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 LONRF2Q1L5Z9 754 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 PUS10Q3MIT2 529 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 GALNT17Q6IS24 598 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 CTR9Q6PD62 1173 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 TPTE2Q6XPS3 522 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 HNRNPLLQ8WVV9 542 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 DPF2Q92785 391 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 AIFM3Q96NN9 605 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 MYL10Q9BUA6 226 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 CSRNP2Q9H175 543 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 CTNND2Q9UQB3 1225 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 LUC7L2Q9Y383 392 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 A6NNZ2 444 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 TMEM232C9JQI7 657 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 NR1I3Q14994 352 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 TUBB8Q3ZCM7 444 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 SPTY2D1Q68D10 685 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 TRIM65Q6PJ69 517 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 LARGE2Q8N3Y3 721 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 CCDC82Q8N4S0 544 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 MSL3Q8N5Y2 521 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 TC2NQ8N9U0 490 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 FAM71BQ8TC56 605 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 RBM17Q96I25 401 aaKnown RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 SNX27Q96L92 541 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 ZSCAN10Q96SZ4 725 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-214ENST00000637038 PARD6BQ9BYG5 372 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 LRRC27Q9C0I9 530 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 CUEDC2Q9H467 287 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 HAUS4Q9H6D7 363 aa4.46□□□□□ -1.7
SCN1A-214ENST00000637038 TNKSO95271 1327 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 IRS2Q9Y4H2 1338 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 EVI5O60447 810 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ZRANB2O95218 330 aaKnown RBP eCLIP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 EEF1GP26641 437 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 UBA7P41226 1012 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 MUM1L1Q5H9M0 696 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ARL6IP4Q66PJ3 421 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 FOXP4Q8IVH2 680 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 STK11IPQ8N1F8 1099 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 RETREG2Q8NC44 543 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 PAGE5Q96GU1 130 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ALS2CR12Q96Q35 445 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms