RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 WDR18Q9BV38 432 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 GLT8D2Q9H1C3 349 aa19.2■□□□□ 0.66
CLN3-252ENST00000636907 GLTPD2A6NH11 291 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L15C9J2P7 530 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L13C9JLJ4 530 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L11C9JVI0 530 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L18D6R9N7 530 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L22D6RA61 530 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L17D6RBQ6 530 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L19D6RCP7 530 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L20D6RJB6 530 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 CCNT1O60563 726 aaKnown RBP19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L24Q0WX57 530 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 SPP2Q13103 211 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 PRKG1Q13976 671 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 ARL6IP4Q66PJ3 421 aaKnown RBP19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP17L6PQ6QN14 398 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP49Q70CQ1 688 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 USP50Q70EL3 339 aaPredicted RBP19.19■□□□□ 0.66
CLN3-252ENST00000636907 RNF214Q8ND24 703 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 SDF4Q9BRK5 362 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 TMEM60Q9H2L4 133 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 AS3MTQ9HBK9 375 aa19.19■□□□□ 0.66
CLN3-252ENST00000636907 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.18■□□□□ 0.66
CLN3-252ENST00000636907 EDIL3O43854 480 aa19.18■□□□□ 0.66
CLN3-252ENST00000636907 USP2O75604 605 aaPredicted RBP19.18■□□□□ 0.66
CLN3-252ENST00000636907 TYRO3Q06418 890 aa19.18■□□□□ 0.66
CLN3-252ENST00000636907 NOL9Q5SY16 702 aaKnown RBP19.18■□□□□ 0.66
CLN3-252ENST00000636907 CCDC174Q6PII3 467 aa19.18■□□□□ 0.66
CLN3-252ENST00000636907 EMILIN3Q9NT22 766 aa19.18■□□□□ 0.66
CLN3-252ENST00000636907 USP14P54578 494 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 BACE1P56817 501 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 SAMD1Q6SPF0 538 aaPredicted RBP19.17■□□□□ 0.66
CLN3-252ENST00000636907 KRT26Q7Z3Y9 468 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 ZNF280CQ8ND82 737 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.17■□□□□ 0.66
CLN3-252ENST00000636907 SYMPKQ92797 1274 aaKnown RBP19.17■□□□□ 0.66
CLN3-252ENST00000636907 EPSTI1Q96J88 318 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 PANK2Q9BZ23 570 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 ZHX2Q9Y6X8 837 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 PHIPQ8WWQ0 1821 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 MEIS2O14770 477 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 VCAM1P19320 739 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 LONRF3Q496Y0 759 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 SASS6Q6UVJ0 657 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 ERCC4Q92889 916 aaPredicted RBP19.17■□□□□ 0.66
CLN3-252ENST00000636907 SLF1Q9BQI6 1058 aa19.17■□□□□ 0.66
CLN3-252ENST00000636907 LAD1O00515 517 aa19.16■□□□□ 0.66
CLN3-252ENST00000636907 OPLAHO14841 1288 aa19.16■□□□□ 0.66
CLN3-252ENST00000636907 POLR2DO15514 142 aaKnown RBP19.16■□□□□ 0.66
CLN3-252ENST00000636907 ORC2Q13416 577 aaPredicted RBP19.16■□□□□ 0.66
CLN3-252ENST00000636907 KRBA2Q6ZNG9 492 aa19.16■□□□□ 0.66
CLN3-252ENST00000636907 ZC3H15Q8WU90 426 aaKnown RBP19.16■□□□□ 0.66
CLN3-252ENST00000636907 TRAF1Q13077 416 aa19.15■□□□□ 0.66
CLN3-252ENST00000636907 ANO3Q9BYT9 981 aa19.15■□□□□ 0.66
CLN3-252ENST00000636907 PAPPA2Q9BXP8 1791 aa19.15■□□□□ 0.66
CLN3-252ENST00000636907 SCN4AP35499 1836 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 NEMFO60524 1076 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 TDP2O95551 362 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 OR52Z1P0C646 297 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 LONP1P36776 959 aaKnown RBP19.14■□□□□ 0.66
CLN3-252ENST00000636907 PRPHP41219 470 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 MAP3K9P80192 1104 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 AP3B2Q13367 1082 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 DTHD1Q6ZMT9 781 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.14■□□□□ 0.66
CLN3-252ENST00000636907 POTEDQ86YR6 584 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 PDILTQ8N807 584 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 PRPF38AQ8NAV1 312 aaKnown RBP19.14■□□□□ 0.66
CLN3-252ENST00000636907 CNNM3Q8NE01 707 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 P2RX7Q99572 595 aaKnown RBP19.14■□□□□ 0.66
CLN3-252ENST00000636907 TANGO6Q9C0B7 1094 aa19.14■□□□□ 0.66
CLN3-252ENST00000636907 TAF1DQ9H5J8 278 aaPredicted RBP19.14■□□□□ 0.66
CLN3-252ENST00000636907 RPAP3Q9H6T3 665 aaPredicted RBP19.14■□□□□ 0.66
CLN3-252ENST00000636907 A0A087X0B3 334 aa19.14■□□□□ 0.65
CLN3-252ENST00000636907 POTECB2RU33 542 aa19.14■□□□□ 0.65
CLN3-252ENST00000636907 KIAA1468Q9P260 1216 aa19.14■□□□□ 0.65
CLN3-252ENST00000636907 SERTAD1Q9UHV2 236 aa19.14■□□□□ 0.65
CLN3-252ENST00000636907 SNCAIPQ9Y6H5 919 aa19.14■□□□□ 0.65
CLN3-252ENST00000636907 SMCHD1A6NHR9 2005 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 OTOFQ9HC10 1997 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 ACTN4O43707 911 aaKnown RBP19.13■□□□□ 0.65
CLN3-252ENST00000636907 SLC37A4O43826 429 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 PPP1R12BO60237 982 aaPredicted RBP19.13■□□□□ 0.65
CLN3-252ENST00000636907 HMGCS2P54868 508 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 VGLL4Q14135 290 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 ANO6Q4KMQ2 910 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 EAPPQ56P03 285 aaPredicted RBP19.13■□□□□ 0.65
CLN3-252ENST00000636907 LDHDQ86WU2 507 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 CDCA5Q96FF9 252 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 C12orf42Q96LP6 360 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 MYH7BA7E2Y1 1941 aa19.13■□□□□ 0.65
CLN3-252ENST00000636907 ZNF536O15090 1300 aa19.12■□□□□ 0.65
CLN3-252ENST00000636907 IQCA1LA6NCM1 817 aa19.12■□□□□ 0.65
CLN3-252ENST00000636907 FLOT1O75955 427 aa19.12■□□□□ 0.65
CLN3-252ENST00000636907 MCTP2Q6DN12 878 aa19.12■□□□□ 0.65
CLN3-252ENST00000636907 PPP4R3AQ6IN85 833 aa19.12■□□□□ 0.65
CLN3-252ENST00000636907 ELOA2Q8IYF1 753 aaPredicted RBP19.12■□□□□ 0.65
CLN3-252ENST00000636907 PPP1R9AQ9ULJ8 1098 aa19.12■□□□□ 0.65
CLN3-252ENST00000636907 MRPL11Q9Y3B7 192 aaKnown RBP19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms