RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 C19orf81C9J6K1 198 aa22.97■■□□□ 1.27
CLN3-250ENST00000636839 NR1I2O75469 434 aa22.97■■□□□ 1.27
CLN3-250ENST00000636839 CLK2P49760 499 aaKnown RBP22.97■■□□□ 1.27
CLN3-250ENST00000636839 SPECC1Q5M775 1068 aa22.97■■□□□ 1.27
CLN3-250ENST00000636839 ADALQ6DHV7 355 aa22.97■■□□□ 1.27
CLN3-250ENST00000636839 MEIS2O14770 477 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 MAP3K11Q16584 847 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 TBCKQ8TEA7 893 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 C12orf42Q96LP6 360 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 A0A1B0GVL5 298 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 PPP6R2O75170 966 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 MRPL12P52815 198 aaKnown RBP22.96■■□□□ 1.27
CLN3-250ENST00000636839 NONOQ15233 471 aaKnown RBP eCLIP22.96■■□□□ 1.27
CLN3-250ENST00000636839 ZSCAN23Q3MJ62 389 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 TREML2Q5T2D2 321 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 KRT25Q7Z3Z0 450 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 LDHDQ86WU2 507 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 CPXCR1Q8N123 301 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 FSIP1Q8NA03 581 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 ATG4CQ96DT6 458 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 DACT1Q9NYF0 836 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 FBXO2Q9UK22 296 aaPredicted RBP22.96■■□□□ 1.27
CLN3-250ENST00000636839 PPP1R9AQ9ULJ8 1098 aa22.96■■□□□ 1.27
CLN3-250ENST00000636839 HOXA13P31271 388 aaPredicted RBP22.95■■□□□ 1.26
CLN3-250ENST00000636839 PTGDRQ13258 359 aa22.95■■□□□ 1.26
CLN3-250ENST00000636839 RAVER2Q9HCJ3 691 aaKnown RBP22.95■■□□□ 1.26
CLN3-250ENST00000636839 DCAF8L1A6NGE4 600 aa22.94■■□□□ 1.26
CLN3-250ENST00000636839 TRAPPC10P48553 1259 aa22.94■■□□□ 1.26
CLN3-250ENST00000636839 LETM2Q2VYF4 491 aa22.94■■□□□ 1.26
CLN3-250ENST00000636839 SHC4Q6S5L8 630 aa22.94■■□□□ 1.26
CLN3-250ENST00000636839 ARMC9Q7Z3E5 817 aa22.94■■□□□ 1.26
CLN3-250ENST00000636839 TMOD4Q9NZQ9 345 aa22.94■■□□□ 1.26
CLN3-250ENST00000636839 LDLRAD1Q5T700 205 aa22.94■■□□□ 1.26
CLN3-250ENST00000636839 ERO1BQ86YB8 467 aa22.94■■□□□ 1.26
CLN3-250ENST00000636839 SLC38A10Q9HBR0 1119 aa22.94■■□□□ 1.26
CLN3-250ENST00000636839 SPDYE5A6NIY4 337 aa22.93■■□□□ 1.26
CLN3-250ENST00000636839 GJA5P36382 358 aa22.93■■□□□ 1.26
CLN3-250ENST00000636839 SNW1Q13573 536 aaKnown RBP22.93■■□□□ 1.26
CLN3-250ENST00000636839 SH3D19Q5HYK7 790 aa22.93■■□□□ 1.26
CLN3-250ENST00000636839 C4orf32Q8N8J7 132 aa22.93■■□□□ 1.26
CLN3-250ENST00000636839 KRI1Q8N9T8 703 aaKnown RBP22.93■■□□□ 1.26
CLN3-250ENST00000636839 OPTNQ96CV9 577 aa22.93■■□□□ 1.26
CLN3-250ENST00000636839 TMEM60Q9H2L4 133 aa22.93■■□□□ 1.26
CLN3-250ENST00000636839 PTPREP23469 700 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 NDUFA8P51970 172 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 PPATQ06203 517 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 IL17AQ16552 155 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 CAMK4Q16566 473 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 CATSPERGQ6ZRH7 1159 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 CCPG1Q9ULG6 757 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 VWA5AO00534 786 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 PEX10O60683 326 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 ICAM1P05362 532 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 USP49Q70CQ1 688 aa22.92■■□□□ 1.26
CLN3-250ENST00000636839 A0A1W2PQ27 194 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 A0A1W2PQ64 194 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 A0A1W2PQD8 194 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 SYCE3A1L190 88 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 CCNT1O60563 726 aaKnown RBP22.91■■□□□ 1.26
CLN3-250ENST00000636839 NEK8Q86SG6 692 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 JMYQ8N9B5 988 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 ENGASEQ8NFI3 743 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 RBM46Q8TBY0 533 aaKnown RBP22.91■■□□□ 1.26
CLN3-250ENST00000636839 MRPS27Q92552 414 aaKnown RBP22.91■■□□□ 1.26
CLN3-250ENST00000636839 HOMER2Q9NSB8 354 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 CEP131Q9UPN4 1083 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 CELF2O95319 508 aaKnown RBP22.91■■□□□ 1.26
CLN3-250ENST00000636839 CFBP00751 764 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 ATP2C1P98194 919 aaPredicted RBP22.91■■□□□ 1.26
CLN3-250ENST00000636839 GADL1Q6ZQY3 521 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 CSRNP2Q9H175 543 aa22.91■■□□□ 1.26
CLN3-250ENST00000636839 SRPRBQ9Y5M8 271 aaKnown RBP22.91■■□□□ 1.26
CLN3-250ENST00000636839 CUTAO60888 179 aa22.9■■□□□ 1.26
CLN3-250ENST00000636839 CMA1P23946 247 aa22.9■■□□□ 1.26
CLN3-250ENST00000636839 COG2Q14746 738 aa22.9■■□□□ 1.26
CLN3-250ENST00000636839 POTEEQ6S8J3 1075 aa22.9■■□□□ 1.26
CLN3-250ENST00000636839 RLFQ13129 1914 aa22.89■■□□□ 1.26
CLN3-250ENST00000636839 A0A0G2JLL6 359 aaPredicted RBP22.89■■□□□ 1.26
CLN3-250ENST00000636839 TDP2O95551 362 aa22.89■■□□□ 1.26
CLN3-250ENST00000636839 PFKFB1P16118 471 aa22.89■■□□□ 1.26
CLN3-250ENST00000636839 DSG3P32926 999 aa22.89■■□□□ 1.26
CLN3-250ENST00000636839 GSE1Q14687 1217 aa22.89■■□□□ 1.26
CLN3-250ENST00000636839 PRRT2Q7Z6L0 340 aaPredicted RBP22.89■■□□□ 1.26
CLN3-250ENST00000636839 FCHSD1Q86WN1 690 aa22.89■■□□□ 1.26
CLN3-250ENST00000636839 RIPK3Q9Y572 518 aa22.89■■□□□ 1.26
CLN3-250ENST00000636839 NFIBO00712 420 aa22.89■■□□□ 1.25
CLN3-250ENST00000636839 ALAS1P13196 640 aa22.89■■□□□ 1.25
CLN3-250ENST00000636839 MKRN3Q13064 507 aaKnown RBP22.89■■□□□ 1.25
CLN3-250ENST00000636839 MUM1L1Q5H9M0 696 aa22.89■■□□□ 1.25
CLN3-250ENST00000636839 CCDC183Q5T5S1 534 aa22.89■■□□□ 1.25
CLN3-250ENST00000636839 CST9Q5W186 159 aa22.89■■□□□ 1.25
CLN3-250ENST00000636839 GAS2L3Q86XJ1 694 aa22.89■■□□□ 1.25
CLN3-250ENST00000636839 FMR1NBQ8N0W7 255 aaPredicted RBP22.89■■□□□ 1.25
CLN3-250ENST00000636839 SLC10A4Q96EP9 437 aa22.89■■□□□ 1.25
CLN3-250ENST00000636839 ANO3Q9BYT9 981 aa22.89■■□□□ 1.25
CLN3-250ENST00000636839 PTPRFP10586 1907 aa22.88■■□□□ 1.25
CLN3-250ENST00000636839 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.88■■□□□ 1.25
CLN3-250ENST00000636839 VWA3AA6NCI4 1184 aa22.88■■□□□ 1.25
CLN3-250ENST00000636839 ITGBL1O95965 494 aaPredicted RBP22.88■■□□□ 1.25
CLN3-250ENST00000636839 RESP18Q5W5W9 173 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms