RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 TOP1P11387 765 aaKnown RBP18.27■□□□□ 0.52
LINC00339-209ENST00000635450 ZNF467Q7Z7K2 595 aaPredicted RBP18.27■□□□□ 0.52
LINC00339-209ENST00000635450 CCDC144CPQ8IYA2 1237 aa18.27■□□□□ 0.52
LINC00339-209ENST00000635450 DCAF4Q8WV16 495 aa18.27■□□□□ 0.52
LINC00339-209ENST00000635450 TRERF1Q96PN7 1200 aa18.27■□□□□ 0.52
LINC00339-209ENST00000635450 GPCPD1Q9NPB8 672 aa18.27■□□□□ 0.52
LINC00339-209ENST00000635450 PDLIM7Q9NR12 457 aa18.27■□□□□ 0.52
LINC00339-209ENST00000635450 FBXO40Q9UH90 709 aa18.27■□□□□ 0.52
LINC00339-209ENST00000635450 PDHBP11177 359 aa18.26■□□□□ 0.51
LINC00339-209ENST00000635450 ACVR2BQ13705 512 aa18.26■□□□□ 0.51
LINC00339-209ENST00000635450 MSL3Q8N5Y2 521 aaKnown RBP18.26■□□□□ 0.51
LINC00339-209ENST00000635450 MAP4K1Q92918 833 aa18.26■□□□□ 0.51
LINC00339-209ENST00000635450 RANBP17Q9H2T7 1088 aaKnown RBP18.26■□□□□ 0.51
LINC00339-209ENST00000635450 PRDM5Q9NQX1 630 aaPredicted RBP18.26■□□□□ 0.51
LINC00339-209ENST00000635450 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.25■□□□□ 0.51
LINC00339-209ENST00000635450 TRIM43BA6NCK2 446 aa18.25■□□□□ 0.51
LINC00339-209ENST00000635450 POTEB2H3BUK9 544 aa18.25■□□□□ 0.51
LINC00339-209ENST00000635450 CYP21A2P08686 494 aa18.25■□□□□ 0.51
LINC00339-209ENST00000635450 CCDC144BQ3MJ40 725 aa18.25■□□□□ 0.51
LINC00339-209ENST00000635450 SYDE2Q5VT97 1194 aa18.25■□□□□ 0.51
LINC00339-209ENST00000635450 TRIM43Q96BQ3 446 aaPredicted RBP18.25■□□□□ 0.51
LINC00339-209ENST00000635450 CPVLQ9H3G5 476 aa18.25■□□□□ 0.51
LINC00339-209ENST00000635450 CCPG1Q9ULG6 757 aa18.25■□□□□ 0.51
LINC00339-209ENST00000635450 RBM8AQ9Y5S9 174 aaKnown RBP18.25■□□□□ 0.51
LINC00339-209ENST00000635450 NFIBO00712 420 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 FDX1P10109 184 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 ITGB8P26012 769 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 TLE2Q04725 743 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 TMEM63BQ5T3F8 832 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 CCSAPQ6IQ19 270 aaPredicted RBP18.24■□□□□ 0.51
LINC00339-209ENST00000635450 BTNL9Q6UXG8 535 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 Q7L0L9 218 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 RALYLQ86SE5 291 aaKnown RBP18.24■□□□□ 0.51
LINC00339-209ENST00000635450 RNF180Q86T96 592 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 DGKHQ86XP1 1220 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 KLHDC9Q8NEP7 349 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 UBAC1Q9BSL1 405 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 ANO2Q9NQ90 1003 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 ZSWIM5Q9P217 1185 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 FAM184BQ9ULE4 1060 aa18.24■□□□□ 0.51
LINC00339-209ENST00000635450 CTAGE5O15320 804 aa18.23■□□□□ 0.51
LINC00339-209ENST00000635450 ICAM1P05362 532 aa18.23■□□□□ 0.51
LINC00339-209ENST00000635450 ZNF543Q08ER8 600 aa18.23■□□□□ 0.51
LINC00339-209ENST00000635450 NSMFQ6X4W1 530 aa18.23■□□□□ 0.51
LINC00339-209ENST00000635450 ZSCAN10Q96SZ4 725 aaPredicted RBP18.23■□□□□ 0.51
LINC00339-209ENST00000635450 LSG1Q9H089 658 aaKnown RBP18.23■□□□□ 0.51
LINC00339-209ENST00000635450 ABHD16BQ9H3Z7 469 aa18.23■□□□□ 0.51
LINC00339-209ENST00000635450 CYP39A1Q9NYL5 469 aa18.23■□□□□ 0.51
LINC00339-209ENST00000635450 PQBP1O60828 265 aaKnown RBP18.22■□□□□ 0.51
LINC00339-209ENST00000635450 DUSP11O75319 330 aaKnown RBP18.22■□□□□ 0.51
LINC00339-209ENST00000635450 GOLGA8HP0CJ92 632 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 SNHG28P0DPA3 235 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 ACLYP53396 1101 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 KCNA10Q16322 511 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 TKFCQ3LXA3 575 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 LRIT3Q3SXY7 679 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 C1orf53Q5VUE5 145 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 FBXO16Q8IX29 292 aaPredicted RBP18.22■□□□□ 0.51
LINC00339-209ENST00000635450 NCOA7Q8NI08 942 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 BADQ92934 168 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 UPF3AQ9H1J1 476 aaKnown RBP18.22■□□□□ 0.51
LINC00339-209ENST00000635450 KAT14Q9H8E8 782 aa18.22■□□□□ 0.51
LINC00339-209ENST00000635450 E7EWF7 191 aa18.21■□□□□ 0.51
LINC00339-209ENST00000635450 C6orf222P0C671 652 aaPredicted RBP18.21■□□□□ 0.51
LINC00339-209ENST00000635450 C9orf50Q5SZB4 431 aa18.21■□□□□ 0.51
LINC00339-209ENST00000635450 SLC30A10Q6XR72 485 aa18.21■□□□□ 0.51
LINC00339-209ENST00000635450 EEPD1Q7L9B9 569 aa18.21■□□□□ 0.51
LINC00339-209ENST00000635450 LBHD1Q9BQE6 289 aaPredicted RBP18.21■□□□□ 0.51
LINC00339-209ENST00000635450 PDGFCQ9NRA1 345 aa18.21■□□□□ 0.51
LINC00339-209ENST00000635450 CDH23Q9H251 3354 aa18.21■□□□□ 0.51
LINC00339-209ENST00000635450 TNKSO95271 1327 aa18.21■□□□□ 0.51
LINC00339-209ENST00000635450 ERICH2A1L162 156 aa18.2■□□□□ 0.5
LINC00339-209ENST00000635450 CST5P28325 142 aaPredicted RBP18.2■□□□□ 0.5
LINC00339-209ENST00000635450 BEX3Q00994 111 aa18.2■□□□□ 0.5
LINC00339-209ENST00000635450 IFIT1BQ5T764 474 aaKnown RBP18.2■□□□□ 0.5
LINC00339-209ENST00000635450 PNMA1Q8ND90 353 aa18.2■□□□□ 0.5
LINC00339-209ENST00000635450 CLEC4DQ8WXI8 215 aa18.2■□□□□ 0.5
LINC00339-209ENST00000635450 STARD7Q9NQZ5 370 aa18.2■□□□□ 0.5
LINC00339-209ENST00000635450 PRKAG2Q9UGJ0 569 aa18.2■□□□□ 0.5
LINC00339-209ENST00000635450 ASGR1P07306 291 aa18.19■□□□□ 0.5
LINC00339-209ENST00000635450 CLTBP09497 229 aa18.19■□□□□ 0.5
LINC00339-209ENST00000635450 EPHB4P54760 987 aa18.19■□□□□ 0.5
LINC00339-209ENST00000635450 GJA9P57773 515 aa18.19■□□□□ 0.5
LINC00339-209ENST00000635450 BAATQ14032 418 aaPredicted RBP18.19■□□□□ 0.5
LINC00339-209ENST00000635450 SART3Q15020 963 aaKnown RBP18.19■□□□□ 0.5
LINC00339-209ENST00000635450 RNF20Q5VTR2 975 aa18.19■□□□□ 0.5
LINC00339-209ENST00000635450 ENAHQ8N8S7 591 aaPredicted RBP18.19■□□□□ 0.5
LINC00339-209ENST00000635450 ANKS1AQ92625 1134 aa18.19■□□□□ 0.5
LINC00339-209ENST00000635450 TSEN34Q9BSV6 310 aaKnown RBP18.19■□□□□ 0.5
LINC00339-209ENST00000635450 TAF6LQ9Y6J9 622 aa18.19■□□□□ 0.5
LINC00339-209ENST00000635450 SLC27A2O14975 620 aa18.18■□□□□ 0.5
LINC00339-209ENST00000635450 SMPD1P17405 629 aa18.18■□□□□ 0.5
LINC00339-209ENST00000635450 SHHQ15465 462 aa18.18■□□□□ 0.5
LINC00339-209ENST00000635450 TAPT1Q6NXT6 567 aa18.18■□□□□ 0.5
LINC00339-209ENST00000635450 CYB5R4Q7L1T6 521 aa18.18■□□□□ 0.5
LINC00339-209ENST00000635450 UBA5Q9GZZ9 404 aa18.18■□□□□ 0.5
LINC00339-209ENST00000635450 GNEQ9Y223 722 aaKnown RBP18.18■□□□□ 0.5
LINC00339-209ENST00000635450 BAZ2BQ9UIF8 2168 aaKnown RBP18.18■□□□□ 0.5
LINC00339-209ENST00000635450 MOXD2PA6NHM9 499 aa18.17■□□□□ 0.5
LINC00339-209ENST00000635450 ASB14A6NK59 587 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms