RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 IQCF3P0C7M6 154 aa16.77■□□□□ 0.28
SNX1-214ENST00000625244 SUPT20HL2P0C7V6 817 aa16.77■□□□□ 0.28
SNX1-214ENST00000625244 ZP2Q05996 745 aa16.77■□□□□ 0.28
SNX1-214ENST00000625244 TMED8Q6PL24 325 aaPredicted RBP16.77■□□□□ 0.28
SNX1-214ENST00000625244 TET1Q8NFU7 2136 aa16.77■□□□□ 0.28
SNX1-214ENST00000625244 NEK9Q8TD19 979 aa16.77■□□□□ 0.28
SNX1-214ENST00000625244 CCDC17Q96LX7 622 aa16.77■□□□□ 0.28
SNX1-214ENST00000625244 KANSL2Q9H9L4 492 aa16.77■□□□□ 0.28
SNX1-214ENST00000625244 PDGFCQ9NRA1 345 aa16.77■□□□□ 0.28
SNX1-214ENST00000625244 VPS13AQ96RL7 3174 aa16.77■□□□□ 0.28
SNX1-214ENST00000625244 PTPRZ1P23471 2315 aaPredicted RBP16.77■□□□□ 0.28
SNX1-214ENST00000625244 CACNA1HO95180 2353 aa16.77■□□□□ 0.27
SNX1-214ENST00000625244 CYP2D7A0A087X1C5 515 aa16.76■□□□□ 0.27
SNX1-214ENST00000625244 CDK8P49336 464 aa16.76■□□□□ 0.27
SNX1-214ENST00000625244 FOXK2Q01167 660 aa16.76■□□□□ 0.27
SNX1-214ENST00000625244 SLFN5Q08AF3 891 aa16.76■□□□□ 0.27
SNX1-214ENST00000625244 OS9Q13438 667 aaPredicted RBP16.76■□□□□ 0.27
SNX1-214ENST00000625244 IER5LQ5T953 404 aa16.76■□□□□ 0.27
SNX1-214ENST00000625244 FAM9BQ8IZU0 186 aa16.76■□□□□ 0.27
SNX1-214ENST00000625244 LCORLQ8N3X6 602 aa16.76■□□□□ 0.27
SNX1-214ENST00000625244 FAM133AQ8N9E0 248 aa16.76■□□□□ 0.27
SNX1-214ENST00000625244 PRPF38AQ8NAV1 312 aaKnown RBP16.76■□□□□ 0.27
SNX1-214ENST00000625244 SOWAHBA6NEL2 793 aa16.75■□□□□ 0.27
SNX1-214ENST00000625244 C19orf67A6NJJ6 358 aa16.75■□□□□ 0.27
SNX1-214ENST00000625244 BAIAP3O94812 1187 aa16.75■□□□□ 0.27
SNX1-214ENST00000625244 ERVK-21P61565 698 aa16.75■□□□□ 0.27
SNX1-214ENST00000625244 PUS10Q3MIT2 529 aaKnown RBP16.75■□□□□ 0.27
SNX1-214ENST00000625244 CHST13Q8NET6 341 aa16.75■□□□□ 0.27
SNX1-214ENST00000625244 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.75■□□□□ 0.27
SNX1-214ENST00000625244 PPP1R13LQ8WUF5 828 aa16.75■□□□□ 0.27
SNX1-214ENST00000625244 EAF2Q96CJ1 260 aaPredicted RBP16.75■□□□□ 0.27
SNX1-214ENST00000625244 TECTAO75443 2155 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 PRKAB2O43741 272 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 ZBED4O75132 1171 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 PDE6AP16499 860 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 KCNJ6P48051 423 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 WDR5P61964 334 aaKnown RBP16.74■□□□□ 0.27
SNX1-214ENST00000625244 POLA2Q14181 598 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 SLC9C2Q5TAH2 1124 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 TAPT1Q6NXT6 567 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 TGS1Q96RS0 853 aaKnown RBP16.74■□□□□ 0.27
SNX1-214ENST00000625244 ZBED2Q9BTP6 218 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.74■□□□□ 0.27
SNX1-214ENST00000625244 SLC38A10Q9HBR0 1119 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 HOMER2Q9NSB8 354 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 FBXO40Q9UH90 709 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 Q9Y3F1 56 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 PTPRSQ13332 1948 aa16.74■□□□□ 0.27
SNX1-214ENST00000625244 PITPNM1O00562 1244 aa16.73■□□□□ 0.27
SNX1-214ENST00000625244 PTPN5P54829 565 aa16.73■□□□□ 0.27
SNX1-214ENST00000625244 DEFB103AP81534 67 aa16.73■□□□□ 0.27
SNX1-214ENST00000625244 IQSEC1Q6DN90 963 aa16.73■□□□□ 0.27
SNX1-214ENST00000625244 EEPD1Q7L9B9 569 aa16.73■□□□□ 0.27
SNX1-214ENST00000625244 FBXO16Q8IX29 292 aaPredicted RBP16.73■□□□□ 0.27
SNX1-214ENST00000625244 RETREG2Q8NC44 543 aa16.73■□□□□ 0.27
SNX1-214ENST00000625244 KIFC2Q96AC6 838 aa16.73■□□□□ 0.27
SNX1-214ENST00000625244 CTDP1Q9Y5B0 961 aaPredicted RBP16.73■□□□□ 0.27
SNX1-214ENST00000625244 MYH8P13535 1937 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 LINC01553A4QN01 128 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 ASB14A6NK59 587 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 RBAK-RBAKDNI3L0D1 243 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 ANP32CO43423 234 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 GFRA3O60609 400 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 SURF6O75683 361 aaKnown RBP16.72■□□□□ 0.27
SNX1-214ENST00000625244 NDUFB10O96000 172 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 IRS1P35568 1242 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 C12orf60Q5U649 245 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 C16orf86Q6ZW13 317 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 RAD9AQ99638 391 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 ARMT1Q9H993 441 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 A1CFQ9NQ94 594 aaKnown RBP16.72■□□□□ 0.27
SNX1-214ENST00000625244 PRKAG3Q9UGI9 489 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 MUTYHQ9UIF7 546 aa16.72■□□□□ 0.27
SNX1-214ENST00000625244 ZNF532Q9HCE3 1301 aa16.71■□□□□ 0.27
SNX1-214ENST00000625244 TCRBV5S4A2TA0A5A2 114 aa16.71■□□□□ 0.27
SNX1-214ENST00000625244 F5H6K3 240 aa16.71■□□□□ 0.27
SNX1-214ENST00000625244 PURAQ00577 322 aaKnown RBP16.71■□□□□ 0.27
SNX1-214ENST00000625244 KLRC3Q07444 240 aa16.71■□□□□ 0.27
SNX1-214ENST00000625244 TCF15Q12870 199 aa16.71■□□□□ 0.27
SNX1-214ENST00000625244 GPNMBQ14956 572 aa16.71■□□□□ 0.27
SNX1-214ENST00000625244 FAM47CQ5HY64 1035 aa16.71■□□□□ 0.27
SNX1-214ENST00000625244 ADHFE1Q8IWW8 467 aa16.71■□□□□ 0.27
SNX1-214ENST00000625244 RIF1Q5UIP0 2472 aaKnown RBP16.71■□□□□ 0.26
SNX1-214ENST00000625244 GJB5O95377 273 aa16.7■□□□□ 0.26
SNX1-214ENST00000625244 MYL3P08590 195 aa16.7■□□□□ 0.26
SNX1-214ENST00000625244 OAZ1P54368 228 aa16.7■□□□□ 0.26
SNX1-214ENST00000625244 NBPF20Q3BBV1 942 aa16.7■□□□□ 0.26
SNX1-214ENST00000625244 SSH3Q8TE77 659 aa16.7■□□□□ 0.26
SNX1-214ENST00000625244 POLR3EQ9NVU0 708 aa16.7■□□□□ 0.26
SNX1-214ENST00000625244 USP17L12C9JPN9 530 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 USP17L21D6R901 530 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 BCAR3O75815 825 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 TCTN1Q2MV58 587 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 SLFNL1Q499Z3 407 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 HERC4Q5GLZ8 1057 aaPredicted RBP16.69■□□□□ 0.26
SNX1-214ENST00000625244 KIAA1211Q6ZU35 1233 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 ARHGAP45Q92619 1136 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 C17orf80Q9BSJ5 609 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 UPF3BQ9BZI7 483 aaKnown RBP16.69■□□□□ 0.26
SNX1-214ENST00000625244 ACAD9Q9H845 621 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms