RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 CNGA1P29973 690 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 GSK3AP49840 483 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 SEPHS1P49903 392 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 RASSF7Q02833 373 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 CDKAL1Q5VV42 579 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 EEF1DP3Q658K8 133 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 RSPO2Q6UXX9 243 aaPredicted RBP6.9□□□□□ -1.3
CPNE3-213ENST00000622183 FGD2Q7Z6J4 655 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 PPIL6Q8IXY8 311 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 PPM1KQ8N3J5 372 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 DDX1Q92499 740 aaKnown RBP6.9□□□□□ -1.3
CPNE3-213ENST00000622183 SCLYQ96I15 445 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 MAGEB10Q96LZ2 347 aaPredicted RBP6.9□□□□□ -1.3
CPNE3-213ENST00000622183 NPFFR2Q9Y5X5 522 aa6.9□□□□□ -1.3
CPNE3-213ENST00000622183 FAM83GA6ND36 823 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 AQP7O14520 342 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 ASLP04424 464 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 ITGB2P05107 769 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 SYPP08247 313 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 FSTP19883 344 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 TPP2P29144 1249 aaPredicted RBP6.89□□□□□ -1.31
CPNE3-213ENST00000622183 PCBP3P57721 371 aaKnown RBP6.89□□□□□ -1.31
CPNE3-213ENST00000622183 CT47A1Q5JQC4 288 aaPredicted RBP6.89□□□□□ -1.31
CPNE3-213ENST00000622183 RTP2Q5QGT7 225 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 E4F1Q66K89 784 aaPredicted RBP6.89□□□□□ -1.31
CPNE3-213ENST00000622183 CNNM4Q6P4Q7 775 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 USHBP1Q8N6Y0 703 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 HSPA12BQ96MM6 686 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 ZFYVE21Q9BQ24 234 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 GPRC5CQ9NQ84 441 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 PLAGL2Q9UPG8 496 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 ATP8A1Q9Y2Q0 1164 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 TNPO3Q9Y5L0 923 aaKnown RBP6.89□□□□□ -1.31
CPNE3-213ENST00000622183 ASXL2Q76L83 1435 aa6.89□□□□□ -1.31
CPNE3-213ENST00000622183 TCRBV16S1A1N1A0A5B0 115 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 H3BS24 57 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 MEFVO15553 781 aaPredicted RBP6.88□□□□□ -1.31
CPNE3-213ENST00000622183 NAT1P18440 290 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 ENDOUP21128 410 aaKnown RBP6.88□□□□□ -1.31
CPNE3-213ENST00000622183 LTBRP36941 435 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 KCNAB2Q13303 367 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 IFI16Q16666 785 aaKnown RBP6.88□□□□□ -1.31
CPNE3-213ENST00000622183 PLA2G4EQ3MJ16 856 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 RNF111Q6ZNA4 994 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 SLC51AQ86UW1 340 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 KSR1Q8IVT5 923 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 PHF20Q9BVI0 1012 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 LRRC4CQ9HCJ2 640 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 GPR27Q9NS67 375 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 TYW1Q9NV66 732 aaKnown RBP6.88□□□□□ -1.31
CPNE3-213ENST00000622183 DDX56Q9NY93 547 aaKnown RBP6.88□□□□□ -1.31
CPNE3-213ENST00000622183 ZSWIM5Q9P217 1185 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 TCFL5Q9UL49 500 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 TRAF6Q9Y4K3 522 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 SNX11Q9Y5W9 270 aa6.88□□□□□ -1.31
CPNE3-213ENST00000622183 PITPNM2Q9BZ72 1349 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 TMEM265A0A087WTH1 108 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 WASH4PA8MWX3 477 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 ARNTLO00327 626 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 OPA1O60313 960 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 RASGRP1O95267 797 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 CRTAMO95727 393 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 GSTM1P09488 218 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 PLS3P13797 630 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 IGFALSP35858 605 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 GPR85P60893 370 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 ZNF460Q14592 562 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 KCNT2Q6UVM3 1135 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 TMPRSS7Q7RTY8 843 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 JAMLQ86YT9 394 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 CCDC103Q8IW40 242 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 AHI1Q8N157 1196 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 AFAP1L2Q8N4X5 818 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 UBR7Q8N806 425 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 NETO1Q8TDF5 533 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 STAG1Q8WVM7 1258 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 UBE2FQ969M7 185 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 FAM126AQ9BYI3 521 aaPredicted RBP6.87□□□□□ -1.31
CPNE3-213ENST00000622183 FOXP3Q9BZS1 431 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 SEMA3GQ9NS98 782 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 DUSP13Q9UII6 198 aa6.87□□□□□ -1.31
CPNE3-213ENST00000622183 TRBV23OR9-2A0A075B6M9 112 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 B4E1Z4 1266 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 FGF10O15520 208 aaPredicted RBP6.86□□□□□ -1.31
CPNE3-213ENST00000622183 CYP26A1O43174 497 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 NPTXRO95502 500 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 NFKB2Q00653 900 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 GUCY1A3Q02108 690 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 IQCEQ6IPM2 695 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 DDX42Q86XP3 938 aaKnown RBP eCLIP6.86□□□□□ -1.31
CPNE3-213ENST00000622183 ZDHHC13Q8IUH4 622 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 PLD6Q8N2A8 252 aaKnown RBP6.86□□□□□ -1.31
CPNE3-213ENST00000622183 PRPF38AQ8NAV1 312 aaKnown RBP6.86□□□□□ -1.31
CPNE3-213ENST00000622183 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.86□□□□□ -1.31
CPNE3-213ENST00000622183 CLEC1BQ9P126 229 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 PIM2Q9P1W9 311 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 TMEFF2Q9UIK5 374 aaPredicted RBP6.86□□□□□ -1.31
CPNE3-213ENST00000622183 PCDHA11Q9Y5I1 949 aa6.86□□□□□ -1.31
CPNE3-213ENST00000622183 SSU72P8A0A1W2PR75 194 aa6.85□□□□□ -1.31
CPNE3-213ENST00000622183 GDF11O95390 407 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms