RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CCDC83Q8IWF9 413 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 PIBF1Q8WXW3 757 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 AMNQ9BXJ7 453 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 EFCC1Q9HA90 598 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 SEC63Q9UGP8 760 aaKnown RBP22.81■■□□□ 1.24
UPF3A-211ENST00000618700 V9GY48 417 aaPredicted RBP22.81■■□□□ 1.24
UPF3A-211ENST00000618700 FMNL1O95466 1100 aaPredicted RBP22.8■■□□□ 1.24
UPF3A-211ENST00000618700 CTGFP29279 349 aa22.8■■□□□ 1.24
UPF3A-211ENST00000618700 MAPK4P31152 587 aa22.8■■□□□ 1.24
UPF3A-211ENST00000618700 CAP1Q01518 475 aa22.8■■□□□ 1.24
UPF3A-211ENST00000618700 NSUN7Q8NE18 718 aaKnown RBP22.8■■□□□ 1.24
UPF3A-211ENST00000618700 SLC26A6Q9BXS9 759 aa22.8■■□□□ 1.24
UPF3A-211ENST00000618700 MROH8Q9H579 483 aa22.8■■□□□ 1.24
UPF3A-211ENST00000618700 RBM27Q9P2N5 1060 aaKnown RBP22.8■■□□□ 1.24
UPF3A-211ENST00000618700 SMCHD1A6NHR9 2005 aa22.8■■□□□ 1.24
UPF3A-211ENST00000618700 STK36Q9NRP7 1315 aa22.8■■□□□ 1.24
UPF3A-211ENST00000618700 MGAMO43451 1857 aa22.79■■□□□ 1.24
UPF3A-211ENST00000618700 PKN1Q16512 942 aa22.79■■□□□ 1.24
UPF3A-211ENST00000618700 USH1GQ495M9 461 aa22.79■■□□□ 1.24
UPF3A-211ENST00000618700 NCAPG2Q86XI2 1143 aa22.79■■□□□ 1.24
UPF3A-211ENST00000618700 CHST13Q8NET6 341 aa22.79■■□□□ 1.24
UPF3A-211ENST00000618700 CASP8AP2Q9UKL3 1982 aa22.79■■□□□ 1.24
UPF3A-211ENST00000618700 ABCB11O95342 1321 aa22.79■■□□□ 1.24
UPF3A-211ENST00000618700 ZNF236Q9UL36 1845 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 PPFIA3O75145 1194 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 ALAS1P13196 640 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 SSRP1Q08945 709 aaKnown RBP22.78■■□□□ 1.24
UPF3A-211ENST00000618700 PFKFB3Q16875 520 aaPredicted RBP22.78■■□□□ 1.24
UPF3A-211ENST00000618700 TRIM22Q8IYM9 498 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 CD99L2Q8TCZ2 262 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 ERO1AQ96HE7 468 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 TRIM47Q96LD4 638 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 TRERF1Q96PN7 1200 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 ARHGAP39Q9C0H5 1083 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 RNF146Q9NTX7 359 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 PCDHA1Q9Y5I3 950 aa22.78■■□□□ 1.24
UPF3A-211ENST00000618700 PTPDC1A2A3K4 754 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 C19orf67A6NJJ6 358 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 hCG_1984214I3L0E3 225 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 K7ELQ4 463 aaPredicted RBP22.77■■□□□ 1.24
UPF3A-211ENST00000618700 SCG2P13521 617 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 FCGRTP55899 365 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 TRAF1Q13077 416 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 CUL4AQ13619 759 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 MUM1L1Q5H9M0 696 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 WWC2Q6AWC2 1192 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 GPR142Q7Z601 462 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 ZNF713Q8N859 430 aaPredicted RBP22.77■■□□□ 1.24
UPF3A-211ENST00000618700 SMARCC2Q8TAQ2 1214 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 CLEC4DQ8WXI8 215 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 LLPHQ9BRT6 129 aaKnown RBP22.77■■□□□ 1.24
UPF3A-211ENST00000618700 ACAD9Q9H845 621 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 HOMER2Q9NSB8 354 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 FBXO40Q9UH90 709 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 PLXNB2O15031 1838 aa22.77■■□□□ 1.24
UPF3A-211ENST00000618700 RBBP6Q7Z6E9 1792 aaKnown RBP22.76■■□□□ 1.23
UPF3A-211ENST00000618700 OPLAHO14841 1288 aa22.76■■□□□ 1.23
UPF3A-211ENST00000618700 JAK2O60674 1132 aa22.76■■□□□ 1.23
UPF3A-211ENST00000618700 DTNBO60941 627 aa22.76■■□□□ 1.23
UPF3A-211ENST00000618700 PSMC4P43686 418 aa22.76■■□□□ 1.23
UPF3A-211ENST00000618700 SLC4A3P48751 1232 aa22.76■■□□□ 1.23
UPF3A-211ENST00000618700 AKAP17AQ02040 695 aaKnown RBP22.76■■□□□ 1.23
UPF3A-211ENST00000618700 PLEKHH3Q7Z736 793 aa22.76■■□□□ 1.23
UPF3A-211ENST00000618700 GPKOWQ92917 476 aaPredicted RBP eCLIP22.76■■□□□ 1.23
UPF3A-211ENST00000618700 COA7Q96BR5 231 aa22.76■■□□□ 1.23
UPF3A-211ENST00000618700 NFIBO00712 420 aa22.75■■□□□ 1.23
UPF3A-211ENST00000618700 DEXIO95424 95 aa22.75■■□□□ 1.23
UPF3A-211ENST00000618700 FDPSP14324 419 aaKnown RBP22.75■■□□□ 1.23
UPF3A-211ENST00000618700 GRB14Q14449 540 aa22.75■■□□□ 1.23
UPF3A-211ENST00000618700 KIF22Q14807 665 aa22.75■■□□□ 1.23
UPF3A-211ENST00000618700 HEATR3Q7Z4Q2 680 aa22.75■■□□□ 1.23
UPF3A-211ENST00000618700 HSCBQ8IWL3 235 aa22.75■■□□□ 1.23
UPF3A-211ENST00000618700 CCAR1Q8IX12 1150 aaKnown RBP22.75■■□□□ 1.23
UPF3A-211ENST00000618700 TNS4Q8IZW8 715 aa22.75■■□□□ 1.23
UPF3A-211ENST00000618700 ABRAQ8N0Z2 381 aa22.75■■□□□ 1.23
UPF3A-211ENST00000618700 BARHL2Q9NY43 387 aa22.75■■□□□ 1.23
UPF3A-211ENST00000618700 MRPL11Q9Y3B7 192 aaKnown RBP22.75■■□□□ 1.23
UPF3A-211ENST00000618700 STXBP3O00186 592 aa22.74■■□□□ 1.23
UPF3A-211ENST00000618700 TNPO2O14787 897 aaKnown RBP22.74■■□□□ 1.23
UPF3A-211ENST00000618700 WDR78Q5VTH9 848 aa22.74■■□□□ 1.23
UPF3A-211ENST00000618700 TYW1BQ6NUM6 668 aa22.74■■□□□ 1.23
UPF3A-211ENST00000618700 PPP1R18Q6NYC8 613 aa22.74■■□□□ 1.23
UPF3A-211ENST00000618700 ORC3Q9UBD5 711 aaPredicted RBP22.74■■□□□ 1.23
UPF3A-211ENST00000618700 STRNO43815 780 aa22.73■■□□□ 1.23
UPF3A-211ENST00000618700 ECM2O94769 699 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-211ENST00000618700 PTPREP23469 700 aa22.73■■□□□ 1.23
UPF3A-211ENST00000618700 GHRHRQ02643 423 aa22.73■■□□□ 1.23
UPF3A-211ENST00000618700 SHISA4Q96DD7 197 aa22.73■■□□□ 1.23
UPF3A-211ENST00000618700 MAF1Q9H063 256 aa22.73■■□□□ 1.23
UPF3A-211ENST00000618700 A1CFQ9NQ94 594 aaKnown RBP22.73■■□□□ 1.23
UPF3A-211ENST00000618700 IVNS1ABPQ9Y6Y0 642 aa22.73■■□□□ 1.23
UPF3A-211ENST00000618700 SLC15A5A6NIM6 579 aa22.72■■□□□ 1.23
UPF3A-211ENST00000618700 GNRH1P01148 92 aa22.72■■□□□ 1.23
UPF3A-211ENST00000618700 FCER1AP12319 257 aa22.72■■□□□ 1.23
UPF3A-211ENST00000618700 MORN1Q5T089 497 aa22.72■■□□□ 1.23
UPF3A-211ENST00000618700 RGS22Q8NE09 1264 aa22.72■■□□□ 1.23
UPF3A-211ENST00000618700 SOCS4Q8WXH5 440 aa22.72■■□□□ 1.23
UPF3A-211ENST00000618700 MMP19Q99542 508 aa22.72■■□□□ 1.23
UPF3A-211ENST00000618700 CWC22Q9HCG8 908 aaKnown RBP22.72■■□□□ 1.23
UPF3A-211ENST00000618700 CYP39A1Q9NYL5 469 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 157.6 ms