RNA–Protein interactions for RNA: ENST00000616074.4

TRAPPC3-208, Transcript of trafficking protein particle complex 3, humanhuman

TSL 5 BASIC

Gene TRAPPC3, Length 1,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-208ENST00000616074 A0A0U1RQG5 324 aaPredicted RBP24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 TIMP1P01033 207 aa24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 NKX3-2P78367 333 aa24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 BEX3Q00994 111 aa24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 TNFAIP2Q03169 654 aa24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 RRP12Q5JTH9 1297 aaKnown RBP24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 TTBK2Q6IQ55 1244 aa24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 ZNF589Q86UQ0 364 aaPredicted RBP24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 VTI1AQ96AJ9 217 aa24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 CDX2Q99626 313 aaPredicted RBP24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 TTYH1Q9H313 450 aaPredicted RBP24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 CYP39A1Q9NYL5 469 aa24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 CCPG1Q9ULG6 757 aa24.54■■□□□ 1.52
TRAPPC3-208ENST00000616074 CUL9Q8IWT3 2517 aa24.53■■□□□ 1.52
TRAPPC3-208ENST00000616074 ARVCFO00192 962 aa24.53■■□□□ 1.52
TRAPPC3-208ENST00000616074 HSPD1P10809 573 aaKnown RBP24.53■■□□□ 1.52
TRAPPC3-208ENST00000616074 SLC16A2P36021 539 aa24.53■■□□□ 1.52
TRAPPC3-208ENST00000616074 NMIQ13287 307 aaPredicted RBP24.53■■□□□ 1.52
TRAPPC3-208ENST00000616074 RANBP17Q9H2T7 1088 aaKnown RBP24.53■■□□□ 1.52
TRAPPC3-208ENST00000616074 GNEQ9Y223 722 aaKnown RBP24.53■■□□□ 1.52
TRAPPC3-208ENST00000616074 ICAM1P05362 532 aa24.52■■□□□ 1.52
TRAPPC3-208ENST00000616074 PTGS1P23219 599 aa24.52■■□□□ 1.52
TRAPPC3-208ENST00000616074 NSMFQ6X4W1 530 aa24.52■■□□□ 1.52
TRAPPC3-208ENST00000616074 NOL8Q76FK4 1167 aaKnown RBP24.52■■□□□ 1.52
TRAPPC3-208ENST00000616074 PURBQ96QR8 312 aaKnown RBP24.52■■□□□ 1.52
TRAPPC3-208ENST00000616074 TMEM47Q9BQJ4 181 aa24.52■■□□□ 1.52
TRAPPC3-208ENST00000616074 LNPKQ9C0E8 428 aa24.52■■□□□ 1.52
TRAPPC3-208ENST00000616074 ZMYM6O95789 1325 aa24.52■■□□□ 1.52
TRAPPC3-208ENST00000616074 TOP1P11387 765 aaKnown RBP24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 SMPD1P17405 629 aa24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 HAND2P61296 217 aa24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 MFSD5Q6N075 450 aa24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 BTNL9Q6UXG8 535 aa24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 TLK2Q86UE8 772 aa24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 FBXO16Q8IX29 292 aaPredicted RBP24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 FAM126BQ8IXS8 530 aa24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 PDGFCQ9NRA1 345 aa24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 TCP11L1Q9NUJ3 509 aa24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 FRMPD2Q68DX3 1309 aaPredicted RBP24.51■■□□□ 1.51
TRAPPC3-208ENST00000616074 PRUNE2Q8WUY3 3088 aa24.5■■□□□ 1.51
TRAPPC3-208ENST00000616074 TRIM6-TRIM34B2RNG4 842 aa24.5■■□□□ 1.51
TRAPPC3-208ENST00000616074 SYDE2Q5VT97 1194 aa24.5■■□□□ 1.51
TRAPPC3-208ENST00000616074 TAPT1Q6NXT6 567 aa24.5■■□□□ 1.51
TRAPPC3-208ENST00000616074 EEPD1Q7L9B9 569 aa24.5■■□□□ 1.51
TRAPPC3-208ENST00000616074 TICAM2Q86XR7 235 aa24.5■■□□□ 1.51
TRAPPC3-208ENST00000616074 CCDC171Q6TFL3 1326 aa24.5■■□□□ 1.51
TRAPPC3-208ENST00000616074 CXCL17Q6UXB2 119 aa24.49■■□□□ 1.51
TRAPPC3-208ENST00000616074 PHF6Q8IWS0 365 aaKnown RBP eCLIP24.49■■□□□ 1.51
TRAPPC3-208ENST00000616074 MYLIPQ8WY64 445 aa24.49■■□□□ 1.51
TRAPPC3-208ENST00000616074 RILPL2Q969X0 211 aa24.49■■□□□ 1.51
TRAPPC3-208ENST00000616074 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.49■■□□□ 1.511e-7■■■■■ 27.7
TRAPPC3-208ENST00000616074 GPCPD1Q9NPB8 672 aa24.49■■□□□ 1.51
TRAPPC3-208ENST00000616074 TLR3O15455 904 aaKnown RBP24.48■■□□□ 1.51
TRAPPC3-208ENST00000616074 LAMA4Q16363 1823 aa24.48■■□□□ 1.51
TRAPPC3-208ENST00000616074 FSCN1Q16658 493 aaKnown RBP24.48■■□□□ 1.51
TRAPPC3-208ENST00000616074 TMEM63BQ5T3F8 832 aa24.48■■□□□ 1.51
TRAPPC3-208ENST00000616074 MORC4Q8TE76 937 aa24.48■■□□□ 1.51
TRAPPC3-208ENST00000616074 PPP1R12CQ9BZL4 782 aa24.48■■□□□ 1.51
TRAPPC3-208ENST00000616074 VCANP13611 3396 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 NFIBO00712 420 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 DYNC1LI2O43237 492 aaPredicted RBP24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 CD4P01730 458 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 PDHBP11177 359 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 PPIGQ13427 754 aaKnown RBP eCLIP24.47■■□□□ 1.512e-6■■□□□ 13.5
TRAPPC3-208ENST00000616074 BAATQ14032 418 aaPredicted RBP24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 IQSEC1Q6DN90 963 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 B4GALNT3Q6L9W6 998 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 C16orf59Q7L2K0 433 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 TBC1D10CQ8IV04 446 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 AP5M1Q9H0R1 490 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 VTA1Q9NP79 307 aa24.47■■□□□ 1.51
TRAPPC3-208ENST00000616074 TMEM265A0A087WTH1 108 aa24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 CABYRO75952 493 aa24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 CSF2RAP15509 400 aa24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 AKNAD1Q5T1N1 836 aa24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 MFSD6Q6ZSS7 791 aa24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 SMC5Q8IY18 1101 aa24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 SLC43A3Q8NBI5 491 aa24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 MAFAQ8NHW3 353 aaPredicted RBP24.46■■□□□ 1.51
TRAPPC3-208ENST00000616074 GRIN2DO15399 1336 aa24.45■■□□□ 1.5
TRAPPC3-208ENST00000616074 ALDH5A1P51649 535 aaPredicted RBP24.45■■□□□ 1.5
TRAPPC3-208ENST00000616074 ITGA7Q13683 1181 aa24.45■■□□□ 1.5
TRAPPC3-208ENST00000616074 TMEM240Q5SV17 173 aa24.45■■□□□ 1.5
TRAPPC3-208ENST00000616074 KIAA1211Q6ZU35 1233 aa24.45■■□□□ 1.5
TRAPPC3-208ENST00000616074 TMEM199Q8N511 208 aa24.45■■□□□ 1.5
TRAPPC3-208ENST00000616074 ADD3Q9UEY8 706 aaKnown RBP24.45■■□□□ 1.5
TRAPPC3-208ENST00000616074 Q9Y3F1 56 aa24.45■■□□□ 1.5
TRAPPC3-208ENST00000616074 NEDD4P46934 1319 aa24.44■■□□□ 1.5
TRAPPC3-208ENST00000616074 PTPDC1A2A3K4 754 aa24.44■■□□□ 1.5
TRAPPC3-208ENST00000616074 PCP11498 1178 aaKnown RBP24.44■■□□□ 1.5
TRAPPC3-208ENST00000616074 SDSP20132 328 aa24.44■■□□□ 1.5
TRAPPC3-208ENST00000616074 DNAJB2P25686 324 aa24.44■■□□□ 1.5
TRAPPC3-208ENST00000616074 ZNF543Q08ER8 600 aa24.44■■□□□ 1.5
TRAPPC3-208ENST00000616074 SLC30A10Q6XR72 485 aa24.44■■□□□ 1.5
TRAPPC3-208ENST00000616074 CLEC4DQ8WXI8 215 aa24.44■■□□□ 1.5
TRAPPC3-208ENST00000616074 TTC14Q96N46 770 aa24.44■■□□□ 1.5
TRAPPC3-208ENST00000616074 ZEB2O60315 1214 aa24.43■■□□□ 1.5
TRAPPC3-208ENST00000616074 SNHG28P0DPA3 235 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms