RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ZNF408Q9H9D4 720 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 BBOX1O75936 387 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 CTNNA2P26232 953 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 POTEDQ86YR6 584 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 CLEC10AQ8IUN9 316 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 TMOD4Q9NZQ9 345 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 GCOM1H8Y6P7 765 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 SLFN14P0C7P3 912 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 POLR2MP0CAP2 368 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 RPL13P26373 211 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 PABPC4Q13310 644 aaKnown RBP eCLIP9.91□□□□□ -0.823e-8■□□□□ 9.8
PDLIM5-222ENST00000615540 NKX1-1Q15270 411 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 VSTM4Q8IW00 320 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 TCHPQ9BT92 498 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 KIF1AQ12756 1690 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 STK36Q9NRP7 1315 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 IKBKBO14920 756 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 CETN3O15182 167 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 C21orf2O43822 256 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 CCDC172P0C7W6 258 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 POLR2FP61218 127 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 ASPRV1Q53RT3 343 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 MIER3Q7Z3K6 550 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 ZMYND15Q9H091 742 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 POLD4Q9HCU8 107 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 KDM3AQ9Y4C1 1321 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 TRAF1Q13077 416 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 CDC37Q16543 378 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 KLHL7Q8IXQ5 586 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 LARP4BQ92615 738 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 NUP58Q9BVL2 599 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 IFIH1Q9BYX4 1025 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 SWAP70Q9UH65 585 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 CRKP46108 304 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 CASP7P55210 303 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 ARHGEF16Q5VV41 709 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 GALNT17Q6IS24 598 aa9.91□□□□□ -0.82
PDLIM5-222ENST00000615540 NALCNQ8IZF0 1738 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 WDR19Q8NEZ3 1342 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 KIF13AQ9H1H9 1805 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 ECE2O60344 883 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 ATP2C2O75185 946 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 GBP2P32456 591 aaPredicted RBP9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 KIAA0753Q2KHM9 967 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 SYNCQ9H7C4 482 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 POTEMA6NI47 508 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 ZBED4O75132 1171 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 GJD4Q96KN9 370 aaPredicted RBP9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 USP17L10C9JJH3 530 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 NPR1P16066 1061 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 TNFAIP3P21580 790 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 TRIM28Q13263 835 aaKnown RBP9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 COL9A3Q14050 684 aaPredicted RBP9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 SERPINB13Q9UIV8 391 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 PCDHA6Q9UN73 950 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 PCDHA8Q9Y5H6 950 aa9.9□□□□□ -0.82
PDLIM5-222ENST00000615540 KLHL30Q0D2K2 578 aa9.9□□□□□ -0.83
PDLIM5-222ENST00000615540 GJA10Q969M2 543 aa9.9□□□□□ -0.83
PDLIM5-222ENST00000615540 TRIM31Q9BZY9 425 aa9.9□□□□□ -0.83
PDLIM5-222ENST00000615540 VIRMAQ69YN4 1812 aaKnown RBP9.9□□□□□ -0.83
PDLIM5-222ENST00000615540 PNPLA7Q6ZV29 1317 aa9.9□□□□□ -0.83
PDLIM5-222ENST00000615540 EXOC3O60645 756 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 HDXQ7Z353 690 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 METTL16Q86W50 562 aaKnown RBP9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 NOX5Q96PH1 765 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 TUBGCP2Q9BSJ2 902 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 MYO1AQ9UBC5 1043 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 K7ENM7 598 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 BIRC3Q13489 604 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 ALX1Q15699 326 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 SLFN12Q8IYM2 578 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 UBLCP1Q8WVY7 318 aaPredicted RBP9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 DPF2Q92785 391 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 NT5C3AQ9H0P0 336 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 RWDD2AQ9UIY3 292 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 CCPG1Q9ULG6 757 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 CLIC2O15247 247 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 PPP1R2P41236 205 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 GRIN1Q05586 938 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 GRM4Q14833 912 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 GSDMAQ96QA5 445 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 DISC1Q9NRI5 854 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 RSPH14Q9UHP6 348 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 WTIPA6NIX2 430 aaPredicted RBP9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 RXRBP28702 533 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 SLC9C1Q4G0N8 1177 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 TCP11X2Q5H9J9 407 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 SYDE2Q5VT97 1194 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 ANKRD13CQ8N6S4 541 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 H7C1D1 291 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 STAT3P40763 770 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 ADAM9Q13443 819 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 SLC35F6Q8N357 371 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 SMCR8Q8TEV9 937 aaPredicted RBP9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 U2AF1L4Q8WU68 220 aaKnown RBP9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 P2RX5Q93086 422 aa9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 FBXO2Q9UK22 296 aaPredicted RBP9.89□□□□□ -0.83
PDLIM5-222ENST00000615540 GOLGA6L10A0A0M3HER8 536 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 MAGEA1P43355 309 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 TRAPPC10P48553 1259 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms