RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MAD2L2Q9UI95 211 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 ABCB11O95342 1321 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 SYNGAP1Q96PV0 1343 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 PTPDC1A2A3K4 754 aa22.5■■□□□ 1.19
UPF1-212ENST00000601689 PALM3A6NDB9 673 aaPredicted RBP22.5■■□□□ 1.19
UPF1-212ENST00000601689 ASB14A6NK59 587 aa22.5■■□□□ 1.19
UPF1-212ENST00000601689 SH2B2O14492 632 aaPredicted RBP22.5■■□□□ 1.19
UPF1-212ENST00000601689 FARP2O94887 1054 aaPredicted RBP22.5■■□□□ 1.19
UPF1-212ENST00000601689 TROAPQ12815 778 aa22.5■■□□□ 1.19
UPF1-212ENST00000601689 MCF2L2Q86YR7 1114 aa22.5■■□□□ 1.19
UPF1-212ENST00000601689 AMNQ9BXJ7 453 aa22.5■■□□□ 1.19
UPF1-212ENST00000601689 MRPL11Q9Y3B7 192 aaKnown RBP22.5■■□□□ 1.19
UPF1-212ENST00000601689 SEPT4O43236 478 aa22.49■■□□□ 1.19
UPF1-212ENST00000601689 CYBAP13498 195 aa22.49■■□□□ 1.19
UPF1-212ENST00000601689 MUM1L1Q5H9M0 696 aa22.49■■□□□ 1.19
UPF1-212ENST00000601689 BLOC1S2Q6QNY1 142 aa22.49■■□□□ 1.19
UPF1-212ENST00000601689 MAMDC4Q6UXC1 1216 aa22.49■■□□□ 1.19
UPF1-212ENST00000601689 RNF207Q6ZRF8 634 aa22.49■■□□□ 1.19
UPF1-212ENST00000601689 NECAB2Q7Z6G3 386 aa22.49■■□□□ 1.19
UPF1-212ENST00000601689 STAG2Q8N3U4 1231 aa22.49■■□□□ 1.19
UPF1-212ENST00000601689 CYP39A1Q9NYL5 469 aa22.49■■□□□ 1.19
UPF1-212ENST00000601689 BRCA2P51587 3418 aa22.48■■□□□ 1.19
UPF1-212ENST00000601689 ZBTB5O15062 677 aa22.48■■□□□ 1.19
UPF1-212ENST00000601689 JAKMIP1Q96N16 626 aaKnown RBP22.48■■□□□ 1.19
UPF1-212ENST00000601689 CPVLQ9H3G5 476 aa22.48■■□□□ 1.19
UPF1-212ENST00000601689 ABHD16BQ9H3Z7 469 aa22.48■■□□□ 1.19
UPF1-212ENST00000601689 JMJD4Q9H9V9 463 aa22.48■■□□□ 1.19
UPF1-212ENST00000601689 OGDHLQ9ULD0 1010 aa22.48■■□□□ 1.19
UPF1-212ENST00000601689 SMCHD1A6NHR9 2005 aa22.48■■□□□ 1.19
UPF1-212ENST00000601689 LOC102724159A0A0B4J2E5 919 aa22.47■■□□□ 1.19
UPF1-212ENST00000601689 AKR1A1P14550 325 aa22.47■■□□□ 1.19
UPF1-212ENST00000601689 SMARCA1P28370 1054 aa22.47■■□□□ 1.19
UPF1-212ENST00000601689 PWP2Q15269 919 aaKnown RBP22.47■■□□□ 1.19
UPF1-212ENST00000601689 QRICH1Q2TAL8 776 aa22.47■■□□□ 1.19
UPF1-212ENST00000601689 HOMER1Q86YM7 354 aa22.47■■□□□ 1.19
UPF1-212ENST00000601689 RASEFQ8IZ41 740 aa22.47■■□□□ 1.19
UPF1-212ENST00000601689 FAM133AQ8N9E0 248 aa22.47■■□□□ 1.19
UPF1-212ENST00000601689 ARRDC4Q8NCT1 418 aa22.47■■□□□ 1.19
UPF1-212ENST00000601689 SHISA4Q96DD7 197 aa22.47■■□□□ 1.19
UPF1-212ENST00000601689 SEC63Q9UGP8 760 aaKnown RBP22.47■■□□□ 1.19
UPF1-212ENST00000601689 RARBP10826 455 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 CALML3P27482 149 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 BAATQ14032 418 aaPredicted RBP22.46■■□□□ 1.19
UPF1-212ENST00000601689 PRAMEF19Q5SWL8 479 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 SGMS1Q86VZ5 419 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 RGS22Q8NE09 1264 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 KCNB2Q92953 911 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 LRRC2Q9BYS8 371 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 RIOX1Q9H6W3 641 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 SENP2Q9HC62 589 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 ZHX1Q9UKY1 873 aaPredicted RBP22.46■■□□□ 1.19
UPF1-212ENST00000601689 FAM184BQ9ULE4 1060 aa22.46■■□□□ 1.19
UPF1-212ENST00000601689 IGHA2P01877 340 aa22.45■■□□□ 1.18
UPF1-212ENST00000601689 CNTN2Q02246 1040 aa22.45■■□□□ 1.18
UPF1-212ENST00000601689 ADCK5Q3MIX3 580 aa22.45■■□□□ 1.18
UPF1-212ENST00000601689 ARMCX2Q7L311 632 aa22.45■■□□□ 1.18
UPF1-212ENST00000601689 RRP36Q96EU6 259 aaKnown RBP22.45■■□□□ 1.18
UPF1-212ENST00000601689 RBM28Q9NW13 759 aaKnown RBP22.45■■□□□ 1.18
UPF1-212ENST00000601689 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.45■■□□□ 1.18
UPF1-212ENST00000601689 SNX14Q9Y5W7 946 aa22.45■■□□□ 1.18
UPF1-212ENST00000601689 PNMA6FA0A0J9YX94 578 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 NFIBO00712 420 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 EXOSC10Q01780 885 aaKnown RBP22.44■■□□□ 1.18
UPF1-212ENST00000601689 ACVR2BQ13705 512 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 CCDC144CPQ8IYA2 1237 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 SAMD3Q8N6K7 520 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 DNERQ8NFT8 737 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 DPF3Q92784 378 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 MYL10Q9BUA6 226 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 USP26Q9BXU7 913 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 SPC25Q9HBM1 224 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 MAP3K20Q9NYL2 800 aaKnown RBP22.44■■□□□ 1.18
UPF1-212ENST00000601689 BAZ2BQ9UIF8 2168 aaKnown RBP22.44■■□□□ 1.18
UPF1-212ENST00000601689 NAP1L2Q9ULW6 460 aaPredicted RBP22.44■■□□□ 1.18
UPF1-212ENST00000601689 PCDHA1Q9Y5I3 950 aa22.44■■□□□ 1.18
UPF1-212ENST00000601689 MCM3APO60318 1980 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 KBTBD13C9JR72 458 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 ZBTB43O43298 467 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 RPS6P62753 249 aaKnown RBP22.43■■□□□ 1.18
UPF1-212ENST00000601689 PPP2R5BQ15173 497 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 LHX8Q68G74 356 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 MICU3Q86XE3 530 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 FANCBQ8NB91 859 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 TRPV1Q8NER1 839 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 CLEC4DQ8WXI8 215 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 MTMR8Q96EF0 704 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 PAWRQ96IZ0 340 aaKnown RBP22.43■■□□□ 1.18
UPF1-212ENST00000601689 SPZ1Q9BXG8 430 aa22.43■■□□□ 1.18
UPF1-212ENST00000601689 MYCNP04198 464 aaPredicted RBP22.42■■□□□ 1.18
UPF1-212ENST00000601689 CASTP20810 708 aaKnown RBP22.42■■□□□ 1.18
UPF1-212ENST00000601689 RNF180Q86T96 592 aa22.42■■□□□ 1.18
UPF1-212ENST00000601689 PIGSQ96S52 555 aa22.42■■□□□ 1.18
UPF1-212ENST00000601689 C11orf49Q9H6J7 331 aa22.42■■□□□ 1.18
UPF1-212ENST00000601689 GPHNQ9NQX3 736 aaPredicted RBP22.42■■□□□ 1.18
UPF1-212ENST00000601689 FRMPD3Q5JV73 1810 aa22.41■■□□□ 1.18
UPF1-212ENST00000601689 CCDC196A0A1B0GTZ2 297 aa22.41■■□□□ 1.18
UPF1-212ENST00000601689 SOWAHBA6NEL2 793 aa22.41■■□□□ 1.18
UPF1-212ENST00000601689 SNAI1O95863 264 aaPredicted RBP22.41■■□□□ 1.18
UPF1-212ENST00000601689 TCEANC2Q96MN5 208 aa22.41■■□□□ 1.18
UPF1-212ENST00000601689 XPNPEP3Q9NQH7 507 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms