RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 AP5M1Q9H0R1 490 aa20.74■□□□□ 0.91
SHKBP1-223ENST00000600552 COL6A3P12111 3177 aa20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 DYNC1LI2O43237 492 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 PLA2G6O60733 806 aa20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 TOP1P11387 765 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 SYDE2Q5VT97 1194 aa20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 ANKRD33Q7Z3H0 272 aa20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 FBXO16Q8IX29 292 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 UPF3AQ9H1J1 476 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 RWDD1Q9H446 243 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 PDGFCQ9NRA1 345 aa20.73■□□□□ 0.91
SHKBP1-223ENST00000600552 A0A0U1RQG5 324 aaPredicted RBP20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 MFSD6Q6ZSS7 791 aa20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 TOX2Q96NM4 488 aa20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 CDX2Q99626 313 aaPredicted RBP20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 PPP1R12CQ9BZL4 782 aa20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 KATNBL1Q9H079 304 aa20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 SEMA6BQ9H3T3 888 aa20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 CYP39A1Q9NYL5 469 aa20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 ELP1O95163 1332 aa20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 CCDC171Q6TFL3 1326 aa20.72■□□□□ 0.91
SHKBP1-223ENST00000600552 PTPDC1A2A3K4 754 aa20.71■□□□□ 0.91
SHKBP1-223ENST00000600552 ARVCFO00192 962 aa20.71■□□□□ 0.91
SHKBP1-223ENST00000600552 TIMP1P01033 207 aa20.71■□□□□ 0.91
SHKBP1-223ENST00000600552 CST5P28325 142 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-223ENST00000600552 BAATQ14032 418 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-223ENST00000600552 CXCL17Q6UXB2 119 aa20.71■□□□□ 0.91
SHKBP1-223ENST00000600552 TLK2Q86UE8 772 aa20.71■□□□□ 0.91
SHKBP1-223ENST00000600552 ZKSCAN3Q9BRR0 538 aa20.71■□□□□ 0.91
SHKBP1-223ENST00000600552 TLR3O15455 904 aaKnown RBP20.7■□□□□ 0.9
SHKBP1-223ENST00000600552 ICAM1P05362 532 aa20.7■□□□□ 0.9
SHKBP1-223ENST00000600552 FGRP09769 529 aa20.7■□□□□ 0.9
SHKBP1-223ENST00000600552 SMPD1P17405 629 aa20.7■□□□□ 0.9
SHKBP1-223ENST00000600552 TMEM63BQ5T3F8 832 aa20.7■□□□□ 0.9
SHKBP1-223ENST00000600552 KIAA1211Q6ZU35 1233 aa20.7■□□□□ 0.9
SHKBP1-223ENST00000600552 RANBP17Q9H2T7 1088 aaKnown RBP20.7■□□□□ 0.9
SHKBP1-223ENST00000600552 ASTN1O14525 1302 aa20.7■□□□□ 0.9
SHKBP1-223ENST00000600552 MROH7Q68CQ1 1323 aa20.7■□□□□ 0.9
SHKBP1-223ENST00000600552 CTAGE5O15320 804 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 IGHDP01880 384 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 ACRP10323 421 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 SDSP20132 328 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 CALML3P27482 149 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 CDK7P50613 346 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 SMAD3P84022 425 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 FSCN1Q16658 493 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 AKNAD1Q5T1N1 836 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 CWC27Q6UX04 472 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 TBC1D10CQ8IV04 446 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 MYLIPQ8WY64 445 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 TBX21Q9UL17 535 aa20.69■□□□□ 0.9
SHKBP1-223ENST00000600552 NFIBO00712 420 aa20.68■□□□□ 0.9
SHKBP1-223ENST00000600552 GOLGA8HP0CJ92 632 aa20.68■□□□□ 0.9
SHKBP1-223ENST00000600552 MFAP1P55081 439 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-223ENST00000600552 CHD1LQ86WJ1 897 aa20.68■□□□□ 0.9
SHKBP1-223ENST00000600552 EXOC6Q8TAG9 804 aa20.68■□□□□ 0.9
SHKBP1-223ENST00000600552 TTYH1Q9H313 450 aaPredicted RBP20.68■□□□□ 0.9
SHKBP1-223ENST00000600552 DIAPH3Q9NSV4 1193 aa20.68■□□□□ 0.9
SHKBP1-223ENST00000600552 LAMA2P24043 3122 aaKnown RBP20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 ZNF213O14771 459 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 ZEB2O60315 1214 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 CYP2C18P33260 490 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 NOVP48745 357 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 PSMC6P62333 389 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 IQSEC1Q6DN90 963 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 MFSD5Q6N075 450 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 TAPT1Q6NXT6 567 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 BTNL9Q6UXG8 535 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 PLEKHM2Q8IWE5 1019 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 CPVLQ9H3G5 476 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 TCP11L1Q9NUJ3 509 aa20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 GNEQ9Y223 722 aaKnown RBP20.67■□□□□ 0.9
SHKBP1-223ENST00000600552 PDHBP11177 359 aa20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 CSF2RAP15509 400 aa20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 PPIGQ13427 754 aaKnown RBP eCLIP20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 SLC30A10Q6XR72 485 aa20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 FAM126BQ8IXS8 530 aa20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 SMC5Q8IY18 1101 aa20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 TMEM199Q8N511 208 aa20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 RNF41Q9H4P4 317 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 ADD3Q9UEY8 706 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 NEDD4P46934 1319 aa20.66■□□□□ 0.9
SHKBP1-223ENST00000600552 ALDH5A1P51649 535 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 ZNF543Q08ER8 600 aa20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 ITGA7Q13683 1181 aa20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 USH1GQ495M9 461 aa20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 RNF207Q6ZRF8 634 aa20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 ESR2Q92731 530 aa20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 UBA5Q9GZZ9 404 aa20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 TRPV6Q9H1D0 765 aa20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 VTA1Q9NP79 307 aa20.65■□□□□ 0.9
SHKBP1-223ENST00000600552 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-223ENST00000600552 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-223ENST00000600552 GRXCR1A8MXD5 290 aa20.64■□□□□ 0.89
SHKBP1-223ENST00000600552 MYL3P08590 195 aa20.64■□□□□ 0.89
SHKBP1-223ENST00000600552 NUCB1Q02818 461 aa20.64■□□□□ 0.89
SHKBP1-223ENST00000600552 MAFAQ8NHW3 353 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-223ENST00000600552 TTC14Q96N46 770 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms