RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 TMEM87BQ96K49 555 aa18.9■□□□□ 0.62
LSM4-206ENST00000600289 AGBL1Q96MI9 1066 aa18.9■□□□□ 0.62
LSM4-206ENST00000600289 RNF146Q9NTX7 359 aa18.9■□□□□ 0.62
LSM4-206ENST00000600289 RAPGEFL1Q9UHV5 662 aa18.9■□□□□ 0.62
LSM4-206ENST00000600289 REC8O95072 547 aa18.89■□□□□ 0.61
LSM4-206ENST00000600289 KRT32Q14532 448 aa18.89■□□□□ 0.61
LSM4-206ENST00000600289 TMEM67Q5HYA8 995 aa18.89■□□□□ 0.61
LSM4-206ENST00000600289 FAM109BQ6ICB4 259 aaPredicted RBP18.89■□□□□ 0.61
LSM4-206ENST00000600289 MAP3K14Q99558 947 aa18.89■□□□□ 0.61
LSM4-206ENST00000600289 NRBP1Q9UHY1 535 aa18.89■□□□□ 0.61
LSM4-206ENST00000600289 CCPG1Q9ULG6 757 aa18.89■□□□□ 0.61
LSM4-206ENST00000600289 PFASO15067 1338 aa18.89■□□□□ 0.61
LSM4-206ENST00000600289 DNAH12Q6ZR08 3092 aa18.89■□□□□ 0.61
LSM4-206ENST00000600289 PALM3A6NDB9 673 aaPredicted RBP18.88■□□□□ 0.61
LSM4-206ENST00000600289 PRC1O43663 620 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 PGK2P07205 417 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 GOLGA8HP0CJ92 632 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 CYBAP13498 195 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 LIFRP42702 1097 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 TROAPQ12815 778 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 GRM4Q14833 912 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 CCDC174Q6PII3 467 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 CHST3Q7LGC8 479 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 TRERF1Q96PN7 1200 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 LY9Q9HBG7 655 aa18.88■□□□□ 0.61
LSM4-206ENST00000600289 SH2B2O14492 632 aaPredicted RBP18.87■□□□□ 0.61
LSM4-206ENST00000600289 ALAS1P13196 640 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 HSPA4P34932 840 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 SNAP25P60880 206 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 MAMDC4Q6UXC1 1216 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 ANKRD35Q8N283 1001 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 TMTC2Q8N394 836 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 ANKLE1Q8NAG6 615 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 DDX11Q96FC9 970 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 TINF2Q9BSI4 451 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 UBE2OQ9C0C9 1292 aaKnown RBP18.87■□□□□ 0.61
LSM4-206ENST00000600289 MAF1Q9H063 256 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 SENP2Q9HC62 589 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 A1CFQ9NQ94 594 aaKnown RBP18.87■□□□□ 0.61
LSM4-206ENST00000600289 MAD2L2Q9UI95 211 aa18.87■□□□□ 0.61
LSM4-206ENST00000600289 SYNGAP1Q96PV0 1343 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 MSCO60682 206 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 DDAH1O94760 285 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 CCND3P30281 292 aaPredicted RBP18.86■□□□□ 0.61
LSM4-206ENST00000600289 CYP2C19P33261 490 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 CATIPQ7Z7H3 387 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 RASEFQ8IZ41 740 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 FAM133AQ8N9E0 248 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 FAM161BQ96MY7 647 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 NEK1Q96PY6 1258 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 HOMER2Q9NSB8 354 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 OGDHLQ9ULD0 1010 aa18.86■□□□□ 0.61
LSM4-206ENST00000600289 SLC4A3P48751 1232 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 COL9A3Q14050 684 aaPredicted RBP18.85■□□□□ 0.61
LSM4-206ENST00000600289 CDC37Q16543 378 aaPredicted RBP18.85■□□□□ 0.61
LSM4-206ENST00000600289 MUM1L1Q5H9M0 696 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 ADGRF4Q8IZF3 695 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 STAG2Q8N3U4 1231 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 TRPV1Q8NER1 839 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 MTMR8Q96EF0 704 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 FGD4Q96M96 766 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 UBA5Q9GZZ9 404 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 JMJD4Q9H9V9 463 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 CYP39A1Q9NYL5 469 aa18.85■□□□□ 0.61
LSM4-206ENST00000600289 KLRF2D3W0D1 207 aa18.84■□□□□ 0.61
LSM4-206ENST00000600289 HMGB1P09429 215 aaKnown RBP18.84■□□□□ 0.61
LSM4-206ENST00000600289 EXOSC10Q01780 885 aaKnown RBP18.84■□□□□ 0.61
LSM4-206ENST00000600289 LHX8Q68G74 356 aa18.84■□□□□ 0.61
LSM4-206ENST00000600289 SGMS1Q86VZ5 419 aa18.84■□□□□ 0.61
LSM4-206ENST00000600289 ZNF654Q8IZM8 581 aa18.84■□□□□ 0.61
LSM4-206ENST00000600289 CPVLQ9H3G5 476 aa18.84■□□□□ 0.61
LSM4-206ENST00000600289 ABCB11O95342 1321 aa18.83■□□□□ 0.61
LSM4-206ENST00000600289 LOC102724159A0A0B4J2E5 919 aa18.83■□□□□ 0.6
LSM4-206ENST00000600289 PWP2Q15269 919 aaKnown RBP18.83■□□□□ 0.6
LSM4-206ENST00000600289 ADCK5Q3MIX3 580 aa18.83■□□□□ 0.6
LSM4-206ENST00000600289 DHX32Q7L7V1 743 aaKnown RBP18.83■□□□□ 0.6
LSM4-206ENST00000600289 RGS22Q8NE09 1264 aa18.83■□□□□ 0.6
LSM4-206ENST00000600289 CLEC4DQ8WXI8 215 aa18.83■□□□□ 0.6
LSM4-206ENST00000600289 RIOX1Q9H6W3 641 aa18.83■□□□□ 0.6
LSM4-206ENST00000600289 DDX20Q9UHI6 824 aaKnown RBP18.83■□□□□ 0.6
LSM4-206ENST00000600289 LTBP2Q14767 1821 aa18.82■□□□□ 0.6
LSM4-206ENST00000600289 SEPT4O43236 478 aa18.82■□□□□ 0.6
LSM4-206ENST00000600289 CALM1P0DP23 149 aa18.82■□□□□ 0.6
LSM4-206ENST00000600289 CALM2P0DP24 149 aa18.82■□□□□ 0.6
LSM4-206ENST00000600289 CALM3P0DP25 149 aa18.82■□□□□ 0.6
LSM4-206ENST00000600289 SMARCA1P28370 1054 aa18.82■□□□□ 0.6
LSM4-206ENST00000600289 PLA2G5P39877 138 aa18.82■□□□□ 0.6
LSM4-206ENST00000600289 QRICH1Q2TAL8 776 aa18.82■□□□□ 0.6
LSM4-206ENST00000600289 GPHNQ9NQX3 736 aaPredicted RBP18.82■□□□□ 0.6
LSM4-206ENST00000600289 SNX14Q9Y5W7 946 aa18.82■□□□□ 0.6
LSM4-206ENST00000600289 CCDC69A6NI79 296 aa18.81■□□□□ 0.6
LSM4-206ENST00000600289 NFIBO00712 420 aa18.81■□□□□ 0.6
LSM4-206ENST00000600289 TAL1P17542 331 aaPredicted RBP18.81■□□□□ 0.6
LSM4-206ENST00000600289 KIF5BP33176 963 aa18.81■□□□□ 0.6
LSM4-206ENST00000600289 MAFAQ8NHW3 353 aaPredicted RBP18.81■□□□□ 0.6
LSM4-206ENST00000600289 CTCFLQ8NI51 663 aaPredicted RBP18.81■□□□□ 0.6
LSM4-206ENST00000600289 SOWAHBA6NEL2 793 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 ZBTB5O15062 677 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 SNAI1O95863 264 aaPredicted RBP18.8■□□□□ 0.6
LSM4-206ENST00000600289 ZNF865P0CJ78 1059 aaPredicted RBP18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms