RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 SGPL1O95470 568 aa17.7■□□□□ 0.42
LIG1-219ENST00000600055 SEC24BO95487 1268 aa17.7■□□□□ 0.42
LIG1-219ENST00000600055 CASTP20810 708 aaKnown RBP17.7■□□□□ 0.42
LIG1-219ENST00000600055 CTCFLQ8NI51 663 aaPredicted RBP17.7■□□□□ 0.42
LIG1-219ENST00000600055 MTMR8Q96EF0 704 aa17.7■□□□□ 0.42
LIG1-219ENST00000600055 MAP3K14Q99558 947 aa17.7■□□□□ 0.42
LIG1-219ENST00000600055 TINF2Q9BSI4 451 aa17.7■□□□□ 0.42
LIG1-219ENST00000600055 RIOX1Q9H6W3 641 aa17.7■□□□□ 0.42
LIG1-219ENST00000600055 CYP39A1Q9NYL5 469 aa17.7■□□□□ 0.42
LIG1-219ENST00000600055 SOWAHBA6NEL2 793 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 POTEB2H3BUK9 544 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 PPP1R11O60927 126 aaPredicted RBP17.69■□□□□ 0.42
LIG1-219ENST00000600055 CYBAP13498 195 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 RPS6KB1P23443 525 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 BAATQ14032 418 aaPredicted RBP17.69■□□□□ 0.42
LIG1-219ENST00000600055 Q6ZUG5 572 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 MICU3Q86XE3 530 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 FBXO11Q86XK2 927 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 HOMER1Q86YM7 354 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 CMTR1Q8N1G2 835 aaKnown RBP17.69■□□□□ 0.42
LIG1-219ENST00000600055 FAM133AQ8N9E0 248 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 PIBF1Q8WXW3 757 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 PIGSQ96S52 555 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 DDX49Q9Y6V7 483 aaKnown RBP17.69■□□□□ 0.42
LIG1-219ENST00000600055 BRCA2P51587 3418 aa17.69■□□□□ 0.42
LIG1-219ENST00000600055 ZNFX1Q9P2E3 1918 aaKnown RBP17.68■□□□□ 0.42
LIG1-219ENST00000600055 PTPDC1A2A3K4 754 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 SMCHD1A6NHR9 2005 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 ZBTB5O15062 677 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 TFRCP02786 760 aaKnown RBP17.68■□□□□ 0.42
LIG1-219ENST00000600055 PSMA5P28066 241 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 CNGA1P29973 690 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 KIF5BP33176 963 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 APOA5Q6Q788 366 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 SLC30A10Q6XR72 485 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 SRBD1Q8N5C6 995 aaKnown RBP17.68■□□□□ 0.42
LIG1-219ENST00000600055 TBC1D5Q92609 795 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 PNMA2Q9UL42 364 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 ASTN1O14525 1302 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 PFASO15067 1338 aa17.68■□□□□ 0.42
LIG1-219ENST00000600055 RBBP6Q7Z6E9 1792 aaKnown RBP17.67■□□□□ 0.42
LIG1-219ENST00000600055 KLF18A0A0U1RQI7 1052 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 SNAI1O95863 264 aaPredicted RBP17.67■□□□□ 0.42
LIG1-219ENST00000600055 CALM1P0DP23 149 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 CALM2P0DP24 149 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 CALM3P0DP25 149 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 FGD1P98174 961 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 APOBRQ0VD83 1088 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 MAMDC4Q6UXC1 1216 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 SYNE3Q6ZMZ3 975 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 FANCBQ8NB91 859 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 CRISPLD2Q9H0B8 497 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 ZSWIM6Q9HCJ5 1215 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 ABCB11O95342 1321 aa17.67■□□□□ 0.42
LIG1-219ENST00000600055 CALML3P27482 149 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 C8orf34Q49A92 452 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 ANO1Q5XXA6 986 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 LHX8Q68G74 356 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 RNF207Q6ZRF8 634 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 RUFY3Q7L099 469 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 ZNF467Q7Z7K2 595 aaPredicted RBP17.66■□□□□ 0.42
LIG1-219ENST00000600055 CCDC82Q8N4S0 544 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 BRF1Q92994 677 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 SPZ1Q9BXG8 430 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 AMNQ9BXJ7 453 aa17.66■□□□□ 0.42
LIG1-219ENST00000600055 NAP1L2Q9ULW6 460 aaPredicted RBP17.66■□□□□ 0.42
LIG1-219ENST00000600055 ZBTB43O43298 467 aa17.65■□□□□ 0.42
LIG1-219ENST00000600055 ZNF865P0CJ78 1059 aaPredicted RBP17.65■□□□□ 0.42
LIG1-219ENST00000600055 GNAQP50148 359 aa17.65■□□□□ 0.42
LIG1-219ENST00000600055 RPS6P62753 249 aaKnown RBP17.65■□□□□ 0.42
LIG1-219ENST00000600055 MLLT1Q03111 559 aaPredicted RBP17.65■□□□□ 0.42
LIG1-219ENST00000600055 TMTC3Q6ZXV5 915 aa17.65■□□□□ 0.42
LIG1-219ENST00000600055 ARMCX2Q7L311 632 aa17.65■□□□□ 0.42
LIG1-219ENST00000600055 MSL3Q8N5Y2 521 aaKnown RBP17.65■□□□□ 0.42
LIG1-219ENST00000600055 UPF3BQ9BZI7 483 aaKnown RBP17.65■□□□□ 0.42
LIG1-219ENST00000600055 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.65■□□□□ 0.42
LIG1-219ENST00000600055 DDX20Q9UHI6 824 aaKnown RBP17.65■□□□□ 0.42
LIG1-219ENST00000600055 MRPL11Q9Y3B7 192 aaKnown RBP17.65■□□□□ 0.42
LIG1-219ENST00000600055 PCDHA1Q9Y5I3 950 aa17.65■□□□□ 0.42
LIG1-219ENST00000600055 GTF3C3Q9Y5Q9 886 aa17.65■□□□□ 0.42
LIG1-219ENST00000600055 SYNGAP1Q96PV0 1343 aa17.65■□□□□ 0.42
LIG1-219ENST00000600055 PLXNA1Q9UIW2 1896 aa17.65■□□□□ 0.42
LIG1-219ENST00000600055 KIAA0100Q14667 2235 aaKnown RBP17.64■□□□□ 0.42
LIG1-219ENST00000600055 PNMA6FA0A0J9YX94 578 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 hCG_1642624A0A1W2PR95 340 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 GOLGA8AA7E2F4 631 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 GOLGA8BA8MQT2 603 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 OPLAHO14841 1288 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 LZTS2Q9BRK4 669 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 AGXT2Q9BYV1 514 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 TM6SF1Q9BZW5 370 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 FAM217BQ9NTX9 383 aaPredicted RBP17.64■□□□□ 0.41
LIG1-219ENST00000600055 ZHX1Q9UKY1 873 aaPredicted RBP17.64■□□□□ 0.41
LIG1-219ENST00000600055 OGDHLQ9ULD0 1010 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 CNPY2Q9Y2B0 182 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 CYP46A1Q9Y6A2 500 aa17.64■□□□□ 0.41
LIG1-219ENST00000600055 SEPT4O43236 478 aa17.63■□□□□ 0.41
LIG1-219ENST00000600055 SMARCA1P28370 1054 aa17.63■□□□□ 0.41
LIG1-219ENST00000600055 CDC27P30260 824 aa17.63■□□□□ 0.41
LIG1-219ENST00000600055 TOB2Q14106 344 aaPredicted RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms