RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CTDP1Q9Y5B0 961 aaPredicted RBP10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 GBF1Q92538 1859 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 ASTN1O14525 1302 aa10.33□□□□□ -0.76
SHKBP1-220ENST00000599716 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 SOWAHBA6NEL2 793 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 PI4K2BG5E9Z4 385 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 ZBED4O75132 1171 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 DUSP11O75319 330 aaKnown RBP10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 CDK7P50613 346 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 KCNQ1P51787 676 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 TFF2Q03403 129 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 ADGRE1Q14246 886 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 SBK1Q52WX2 424 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 GNASQ5JWF2 1037 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 TMEM240Q5SV17 173 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 SLFN13Q68D06 897 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 CCDC174Q6PII3 467 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 CXCL17Q6UXB2 119 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 MAMDC4Q6UXC1 1216 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 ZNF365Q70YC5 407 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 NOL8Q76FK4 1167 aaKnown RBP10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 EEPD1Q7L9B9 569 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 KBTBD3Q8NAB2 608 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 FBXL18Q96ME1 805 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 GLT1D1Q96MS3 346 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 TSEN34Q9BSV6 310 aaKnown RBP10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 PBX4Q9BYU1 374 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 KATNBL1Q9H079 304 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 SLC38A10Q9HBR0 1119 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 PDGFCQ9NRA1 345 aa10.32□□□□□ -0.76
SHKBP1-220ENST00000599716 LCTP09848 1927 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 ZNF318Q5VUA4 2279 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 LRRC37A2A6NM11 1700 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 MOXD2PA6NHM9 499 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 TMEM232C9JQI7 657 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 RNF113AO15541 343 aaKnown RBP10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 NMT2O60551 498 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 PSMC6P62333 389 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 MFSD5Q6N075 450 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 ZSCAN25Q6NSZ9 544 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 KCTD1Q719H9 257 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 FAM126BQ8IXS8 530 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 ZNF444Q8N0Y2 327 aaPredicted RBP10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 NUP133Q8WUM0 1156 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 APPBP2Q92624 585 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 KHSRPQ92945 711 aaKnown RBP eCLIP10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 TOX2Q96NM4 488 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 MTMR4Q9NYA4 1195 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 TCF20Q9UGU0 1960 aaKnown RBP10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 ZNF536O15090 1300 aa10.31□□□□□ -0.76
SHKBP1-220ENST00000599716 ARVCFO00192 962 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 ATP2A1O14983 1001 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 ERC2O15083 957 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 MS4A1P11836 297 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 BMP3P12645 472 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 ALAS1P13196 640 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 MYOGP15173 224 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 MCCP23508 829 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 COPB2P35606 906 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 RABGGTBP53611 331 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 CCL23P55773 120 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 GJA9P57773 515 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 CTDSPL2Q05D32 466 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 IKQ13123 557 aaPredicted RBP10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 MUM1L1Q5H9M0 696 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 DIEXFQ68CQ4 756 aaKnown RBP10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 OTOP2Q7RTS6 562 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 FBXO16Q8IX29 292 aaPredicted RBP10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 IFNL3Q8IZI9 196 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 TRPV6Q9H1D0 765 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 UPF3AQ9H1J1 476 aaKnown RBP10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 NKX2-4Q9H2Z4 354 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 ABHD16BQ9H3Z7 469 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 A1CFQ9NQ94 594 aaKnown RBP10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 RNF146Q9NTX7 359 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 FEM1BQ9UK73 627 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 RCAN3Q9UKA8 241 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 DNAH14Q0VDD8 3507 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 GRIN2DO15399 1336 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 ELP1O95163 1332 aa10.3□□□□□ -0.76
SHKBP1-220ENST00000599716 FAM186AA6NE01 2351 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 A0A0U1RQG5 324 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 TTLL1O95922 423 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 TSPY3P0CV98 308 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 TSPY8P0CW00 308 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 SMPD1P17405 629 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 IGFBP4P22692 258 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 CST5P28325 142 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 TFAP4Q01664 338 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 TNFAIP2Q03169 654 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 PPIGQ13427 754 aaKnown RBP eCLIP10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 RASIP1Q5U651 963 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 ZNF467Q7Z7K2 595 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 TLK2Q86UE8 772 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 MSL3Q8N5Y2 521 aaKnown RBP10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 FAM133AQ8N9E0 248 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 MKL1Q969V6 931 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 SCLYQ96I15 445 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 YBX2Q9Y2T7 364 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms