RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 TRIM43Q96BQ3 446 aaPredicted RBP11.53□□□□□ -0.56
VRK3-216ENST00000599342 RANBP17Q9H2T7 1088 aaKnown RBP11.53□□□□□ -0.56
VRK3-216ENST00000599342 GPCPD1Q9NPB8 672 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 CYP39A1Q9NYL5 469 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 SMCHD1A6NHR9 2005 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 ELP1O95163 1332 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 DNAH12Q6ZR08 3092 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 A0A0U1RQG5 324 aaPredicted RBP11.52□□□□□ -0.57
VRK3-216ENST00000599342 SOWAHBA6NEL2 793 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 ADCY6O43306 1168 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 ASGR1P07306 291 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 PDHBP11177 359 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 NT5C2P49902 561 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 TNFAIP2Q03169 654 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 SHHQ15465 462 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 GNASQ5JWF2 1037 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 CCSAPQ6IQ19 270 aaPredicted RBP11.52□□□□□ -0.57
VRK3-216ENST00000599342 TTBK2Q6IQ55 1244 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 IQCA1Q86XH1 822 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 TTC14Q96N46 770 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 TOX2Q96NM4 488 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 KATNBL1Q9H079 304 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 UPF3AQ9H1J1 476 aaKnown RBP11.52□□□□□ -0.57
VRK3-216ENST00000599342 MTMR10Q9NXD2 777 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 ADD3Q9UEY8 706 aaKnown RBP11.52□□□□□ -0.57
VRK3-216ENST00000599342 PNMA2Q9UL42 364 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 NEDD4P46934 1319 aa11.52□□□□□ -0.57
VRK3-216ENST00000599342 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.51□□□□□ -0.57
VRK3-216ENST00000599342 PTPDC1A2A3K4 754 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 KIAA0355O15063 1070 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 ZNF543Q08ER8 600 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 FAAP100Q0VG06 881 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 CCDC178Q5BJE1 867 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 C9orf50Q5SZB4 431 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 ZNF697Q5TEC3 545 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 EEPD1Q7L9B9 569 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 TLK2Q86UE8 772 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 FBXO16Q8IX29 292 aaPredicted RBP11.51□□□□□ -0.57
VRK3-216ENST00000599342 SLC17A8Q8NDX2 589 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 AP5M1Q9H0R1 490 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 STXBP5LQ9Y2K9 1186 aa11.51□□□□□ -0.57
VRK3-216ENST00000599342 ARVCFO00192 962 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 NFIBO00712 420 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 TLR3O15455 904 aaKnown RBP11.5□□□□□ -0.57
VRK3-216ENST00000599342 ZEB2O60315 1214 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 ITGB8P26012 769 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 IRX5P78411 483 aaPredicted RBP11.5□□□□□ -0.57
VRK3-216ENST00000599342 BEX3Q00994 111 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 FPGSQ05932 587 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 BAATQ14032 418 aaPredicted RBP11.5□□□□□ -0.57
VRK3-216ENST00000599342 IMMTQ16891 758 aaKnown RBP11.5□□□□□ -0.57
VRK3-216ENST00000599342 GPATCH4Q5T3I0 446 aaKnown RBP11.5□□□□□ -0.57
VRK3-216ENST00000599342 FAM109BQ6ICB4 259 aaPredicted RBP11.5□□□□□ -0.57
VRK3-216ENST00000599342 RNPC3Q96LT9 517 aaKnown RBP11.5□□□□□ -0.57
VRK3-216ENST00000599342 MPHOSPH6Q99547 160 aaKnown RBP11.5□□□□□ -0.57
VRK3-216ENST00000599342 ZKSCAN3Q9BRR0 538 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 DSCC1Q9BVC3 393 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 VTA1Q9NP79 307 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 CTNNA3Q9UI47 895 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 ASTN1O14525 1302 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 MCM3APO60318 1980 aa11.5□□□□□ -0.57
VRK3-216ENST00000599342 LOC102724159A0A0B4J2E5 919 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 DYNC1LI2O43237 492 aaPredicted RBP11.49□□□□□ -0.57
VRK3-216ENST00000599342 KDM4AO75164 1064 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 CABYRO75952 493 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 SNHG28P0DPA3 235 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 SMPD1P17405 629 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 CALML3P27482 149 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 ALDH5A1P51649 535 aaPredicted RBP11.49□□□□□ -0.57
VRK3-216ENST00000599342 NKX3-2P78367 333 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 PWP2Q15269 919 aaKnown RBP11.49□□□□□ -0.57
VRK3-216ENST00000599342 FSCN1Q16658 493 aaKnown RBP11.49□□□□□ -0.57
VRK3-216ENST00000599342 IQSEC1Q6DN90 963 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 RNF207Q6ZRF8 634 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 KIAA1211Q6ZU35 1233 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 DGKHQ86XP1 1220 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 FAM161BQ96MY7 647 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 PURBQ96QR8 312 aaKnown RBP11.49□□□□□ -0.57
VRK3-216ENST00000599342 KAT14Q9H8E8 782 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 GNEQ9Y223 722 aaKnown RBP11.49□□□□□ -0.57
VRK3-216ENST00000599342 DDX49Q9Y6V7 483 aaKnown RBP11.49□□□□□ -0.57
VRK3-216ENST00000599342 WDR19Q8NEZ3 1342 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 LRRC37A2A6NM11 1700 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 LAMA4Q16363 1823 aa11.49□□□□□ -0.57
VRK3-216ENST00000599342 B4E1Z4 1266 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 CTAGE5O15320 804 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 TIMP1P01033 207 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 CDK7P50613 346 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 SMAD3P84022 425 aaKnown RBP11.48□□□□□ -0.57
VRK3-216ENST00000599342 CXCL17Q6UXB2 119 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 SLC30A10Q6XR72 485 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 FAM126BQ8IXS8 530 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 PNMA1Q8ND90 353 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 MORC4Q8TE76 937 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 UBAC1Q9BSL1 405 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 KRT23Q9C075 422 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 CNNM2Q9H8M5 875 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 PDGFCQ9NRA1 345 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 TBX21Q9UL17 535 aa11.48□□□□□ -0.57
VRK3-216ENST00000599342 Q9Y3F1 56 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms