RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 FAM83BQ5T0W9 1011 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 ARMCX2Q7L311 632 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 SKAP1Q86WV1 359 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 SIAH1Q8IUQ4 282 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 HERC6Q8IVU3 1022 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 REPS2Q8NFH8 660 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 DYNLL2Q96FJ2 89 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 KCNH6Q9H252 994 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 ABHD16BQ9H3Z7 469 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 OSBPL3Q9H4L5 887 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 TLR7Q9NYK1 1049 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 RIPK3Q9Y572 518 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 ASTN1O14525 1302 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 DNAJC25-GNG10A0A024R161 153 aa16.59■□□□□ 0.25
SHKBP1-218ENST00000598907 LCHNA4D1U4 455 aa16.59■□□□□ 0.25
SHKBP1-218ENST00000598907 PFKMP08237 780 aa16.59■□□□□ 0.25
SHKBP1-218ENST00000598907 IFIT2P09913 472 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-218ENST00000598907 PTCRAQ6ISU1 281 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-218ENST00000598907 TLK2Q86UE8 772 aa16.59■□□□□ 0.25
SHKBP1-218ENST00000598907 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-218ENST00000598907 TEX13BQ9BXU2 312 aa16.59■□□□□ 0.25
SHKBP1-218ENST00000598907 KIF28PB7ZC32 967 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 CABYRO75952 493 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 PDE1AP54750 535 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 TNFAIP2Q03169 654 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 FSCN1Q16658 493 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 LEXMQ3ZCV2 418 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 HFE2Q6ZVN8 426 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 ZNF467Q7Z7K2 595 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 CCDC144CPQ8IYA2 1237 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 CPXCR1Q8N123 301 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 FGD4Q96M96 766 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 NUP88Q99567 741 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 TRMT13Q9NUP7 481 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 TTC41PQ6P2S7 1318 aa16.58■□□□□ 0.24
SHKBP1-218ENST00000598907 MX1P20591 662 aa16.57■□□□□ 0.24
SHKBP1-218ENST00000598907 TMCO2Q7Z6W1 182 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-218ENST00000598907 ANKRD35Q8N283 1001 aa16.57■□□□□ 0.24
SHKBP1-218ENST00000598907 SDR42E1Q8WUS8 393 aa16.57■□□□□ 0.24
SHKBP1-218ENST00000598907 ZNF512BQ96KM6 892 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-218ENST00000598907 RIOK1Q9BRS2 568 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-218ENST00000598907 FTOQ9C0B1 505 aaKnown RBP eCLIP16.57■□□□□ 0.24
SHKBP1-218ENST00000598907 ZNF318Q5VUA4 2279 aa16.57■□□□□ 0.24
SHKBP1-218ENST00000598907 PTPRSQ13332 1948 aa16.57■□□□□ 0.24
SHKBP1-218ENST00000598907 TANC1Q9C0D5 1861 aa16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 MAGEB6P1A0A0J9YX57 407 aa16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 ST18O60284 1047 aa16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 EEF2P13639 858 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 PI4K2BQ8TCG2 481 aa16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 CRNKL1Q9BZJ0 848 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 KATNBL1Q9H079 304 aa16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 AP5M1Q9H0R1 490 aa16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 ALDH8A1Q9H2A2 487 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 ANTXR1Q9H6X2 564 aa16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 GOPCQ9HD26 462 aa16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 ECHDC1Q9NTX5 307 aa16.56■□□□□ 0.24
SHKBP1-218ENST00000598907 H3BQ06 376 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-218ENST00000598907 PHOSPHO2Q8TCD6 241 aa16.55■□□□□ 0.24
SHKBP1-218ENST00000598907 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.55■□□□□ 0.24
SHKBP1-218ENST00000598907 SLF1Q9BQI6 1058 aa16.55■□□□□ 0.24
SHKBP1-218ENST00000598907 SWAP70Q9UH65 585 aa16.55■□□□□ 0.24
SHKBP1-218ENST00000598907 DDX49Q9Y6V7 483 aaKnown RBP16.55■□□□□ 0.24
SHKBP1-218ENST00000598907 TNKSO95271 1327 aa16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 DYNC1LI2O43237 492 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 ATP5JP18859 108 aa16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 PRSS33Q8NF86 280 aa16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 PPP1R13LQ8WUF5 828 aa16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 ZBED2Q9BTP6 218 aa16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 BCL11AQ9H165 835 aa16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 RAVER2Q9HCJ3 691 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 HOMER2Q9NSB8 354 aa16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 CTDP1Q9Y5B0 961 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-218ENST00000598907 GRXCR2A6NFK2 248 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 ZEB2O60315 1214 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 IGSF3O75054 1194 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 KCNJ6P48051 423 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 NKX3-2P78367 333 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 CNTN2Q02246 1040 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 FAM47CQ5HY64 1035 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 EP400NLQ6ZTU2 488 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 GPATCH3Q96I76 525 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 LMCD1Q9NZU5 365 aa16.53■□□□□ 0.24
SHKBP1-218ENST00000598907 CYP2D7A0A087X1C5 515 aa16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 POTEB3A0JP26 581 aa16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 SMPD1P17405 629 aa16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 TMEM63BQ5T3F8 832 aa16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 TSHZ3Q63HK5 1081 aa16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 POTEBQ6S5H4 581 aa16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 LCORLQ8N3X6 602 aa16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 MFSD14AQ96MC6 490 aa16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 SUGCTQ9HAC7 445 aa16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 DCP1AQ9NPI6 582 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 GNEQ9Y223 722 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-218ENST00000598907 USP34Q70CQ2 3546 aa16.52■□□□□ 0.23
SHKBP1-218ENST00000598907 RFC2P35250 354 aa16.51■□□□□ 0.23
SHKBP1-218ENST00000598907 TTC22Q5TAA0 569 aa16.51■□□□□ 0.23
SHKBP1-218ENST00000598907 EEPD1Q7L9B9 569 aa16.51■□□□□ 0.23
SHKBP1-218ENST00000598907 FBXO16Q8IX29 292 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-218ENST00000598907 SEZ6LQ9BYH1 1024 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms