RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 HSPA4P34932 840 aa18.83■□□□□ 0.6
TRIM28-213ENST00000598355 SLC4A3P48751 1232 aa18.83■□□□□ 0.6
TRIM28-213ENST00000598355 CDC37Q16543 378 aaPredicted RBP18.83■□□□□ 0.6
TRIM28-213ENST00000598355 MAF1Q9H063 256 aa18.83■□□□□ 0.6
TRIM28-213ENST00000598355 JMJD4Q9H9V9 463 aa18.83■□□□□ 0.6
TRIM28-213ENST00000598355 GPHNQ9NQX3 736 aaPredicted RBP18.83■□□□□ 0.6
TRIM28-213ENST00000598355 KLRF2D3W0D1 207 aa18.82■□□□□ 0.6
TRIM28-213ENST00000598355 DDAH1O94760 285 aa18.82■□□□□ 0.6
TRIM28-213ENST00000598355 REC8O95072 547 aa18.82■□□□□ 0.6
TRIM28-213ENST00000598355 SNAI1O95863 264 aaPredicted RBP18.82■□□□□ 0.6
TRIM28-213ENST00000598355 TFRCP02786 760 aaKnown RBP18.82■□□□□ 0.6
TRIM28-213ENST00000598355 ZNF865P0CJ78 1059 aaPredicted RBP18.82■□□□□ 0.6
TRIM28-213ENST00000598355 CNTN2Q02246 1040 aa18.82■□□□□ 0.6
TRIM28-213ENST00000598355 ADCK5Q3MIX3 580 aa18.82■□□□□ 0.6
TRIM28-213ENST00000598355 SGMS1Q86VZ5 419 aa18.82■□□□□ 0.6
TRIM28-213ENST00000598355 ZNF654Q8IZM8 581 aa18.82■□□□□ 0.6
TRIM28-213ENST00000598355 KATNBL1Q9H079 304 aa18.82■□□□□ 0.6
TRIM28-213ENST00000598355 SOWAHBA6NEL2 793 aa18.81■□□□□ 0.6
TRIM28-213ENST00000598355 POTEB2H3BUK9 544 aa18.81■□□□□ 0.6
TRIM28-213ENST00000598355 COL6A1P12109 1028 aa18.81■□□□□ 0.6
TRIM28-213ENST00000598355 KRT32Q14532 448 aa18.81■□□□□ 0.6
TRIM28-213ENST00000598355 QRICH1Q2TAL8 776 aa18.81■□□□□ 0.6
TRIM28-213ENST00000598355 MORC4Q8TE76 937 aa18.81■□□□□ 0.6
TRIM28-213ENST00000598355 DIS3LQ8TF46 1054 aaKnown RBP18.81■□□□□ 0.6
TRIM28-213ENST00000598355 NEK1Q96PY6 1258 aa18.81■□□□□ 0.6
TRIM28-213ENST00000598355 RIOX1Q9H6W3 641 aa18.81■□□□□ 0.6
TRIM28-213ENST00000598355 KIAA1217Q5T5P2 1943 aa18.8■□□□□ 0.6
TRIM28-213ENST00000598355 DNAH12Q6ZR08 3092 aa18.8■□□□□ 0.6
TRIM28-213ENST00000598355 LOC102724159A0A0B4J2E5 919 aa18.8■□□□□ 0.6
TRIM28-213ENST00000598355 CYTH3O43739 400 aa18.8■□□□□ 0.6
TRIM28-213ENST00000598355 EXOSC10Q01780 885 aaKnown RBP18.8■□□□□ 0.6
TRIM28-213ENST00000598355 GHRHRQ02643 423 aa18.8■□□□□ 0.6
TRIM28-213ENST00000598355 PWP2Q15269 919 aaKnown RBP18.8■□□□□ 0.6
TRIM28-213ENST00000598355 PRAMEF19Q5SWL8 479 aa18.8■□□□□ 0.6
TRIM28-213ENST00000598355 CATIPQ7Z7H3 387 aa18.8■□□□□ 0.6
TRIM28-213ENST00000598355 TMTC2Q8N394 836 aa18.8■□□□□ 0.6
TRIM28-213ENST00000598355 RGS22Q8NE09 1264 aa18.8■□□□□ 0.6
TRIM28-213ENST00000598355 ABCB11O95342 1321 aa18.79■□□□□ 0.6
TRIM28-213ENST00000598355 NSMFQ6X4W1 530 aa18.79■□□□□ 0.6
TRIM28-213ENST00000598355 SLC30A10Q6XR72 485 aa18.79■□□□□ 0.6
TRIM28-213ENST00000598355 ARMCX2Q7L311 632 aa18.79■□□□□ 0.6
TRIM28-213ENST00000598355 PAWRQ96IZ0 340 aaKnown RBP18.79■□□□□ 0.6
TRIM28-213ENST00000598355 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-213ENST00000598355 CNPY2Q9Y2B0 182 aa18.79■□□□□ 0.6
TRIM28-213ENST00000598355 ZBTB5O15062 677 aa18.78■□□□□ 0.6
TRIM28-213ENST00000598355 PPP1R11O60927 126 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-213ENST00000598355 AKR1A1P14550 325 aa18.78■□□□□ 0.6
TRIM28-213ENST00000598355 CNGA1P29973 690 aa18.78■□□□□ 0.6
TRIM28-213ENST00000598355 BAATQ14032 418 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-213ENST00000598355 DHX32Q7L7V1 743 aaKnown RBP18.78■□□□□ 0.6
TRIM28-213ENST00000598355 NECAB2Q7Z6G3 386 aa18.78■□□□□ 0.6
TRIM28-213ENST00000598355 CCDC144CPQ8IYA2 1237 aa18.78■□□□□ 0.6
TRIM28-213ENST00000598355 SPZ1Q9BXG8 430 aa18.78■□□□□ 0.6
TRIM28-213ENST00000598355 ABHD16BQ9H3Z7 469 aa18.78■□□□□ 0.6
TRIM28-213ENST00000598355 SNX14Q9Y5W7 946 aa18.78■□□□□ 0.6
TRIM28-213ENST00000598355 ASB14A6NK59 587 aa18.77■□□□□ 0.6
TRIM28-213ENST00000598355 DNM1LO00429 736 aa18.77■□□□□ 0.6
TRIM28-213ENST00000598355 OPLAHO14841 1288 aa18.77■□□□□ 0.6
TRIM28-213ENST00000598355 HMGB1P09429 215 aaKnown RBP18.77■□□□□ 0.6
TRIM28-213ENST00000598355 SMARCA1P28370 1054 aa18.77■□□□□ 0.6
TRIM28-213ENST00000598355 RPS6P62753 249 aaKnown RBP18.77■□□□□ 0.6
TRIM28-213ENST00000598355 USH1GQ495M9 461 aa18.77■□□□□ 0.6
TRIM28-213ENST00000598355 PRPF38BQ5VTL8 546 aaKnown RBP18.77■□□□□ 0.6
TRIM28-213ENST00000598355 FBXO11Q86XK2 927 aa18.77■□□□□ 0.6
TRIM28-213ENST00000598355 MYL10Q9BUA6 226 aa18.77■□□□□ 0.6
TRIM28-213ENST00000598355 HTATIP2Q9BUP3 242 aa18.77■□□□□ 0.6
TRIM28-213ENST00000598355 LRRC2Q9BYS8 371 aa18.77■□□□□ 0.6
TRIM28-213ENST00000598355 EDNRBP24530 442 aa18.76■□□□□ 0.59
TRIM28-213ENST00000598355 ALDH5A1P51649 535 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-213ENST00000598355 ACVR2BQ13705 512 aa18.76■□□□□ 0.59
TRIM28-213ENST00000598355 APOA5Q6Q788 366 aa18.76■□□□□ 0.59
TRIM28-213ENST00000598355 RNF207Q6ZRF8 634 aa18.76■□□□□ 0.59
TRIM28-213ENST00000598355 FBXL16Q8N461 479 aa18.76■□□□□ 0.59
TRIM28-213ENST00000598355 PURBQ96QR8 312 aaKnown RBP18.76■□□□□ 0.59
TRIM28-213ENST00000598355 AMNQ9BXJ7 453 aa18.76■□□□□ 0.59
TRIM28-213ENST00000598355 CCDC69A6NI79 296 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 ADCY6O43306 1168 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 CALM1P0DP23 149 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 CALM2P0DP24 149 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 CALM3P0DP25 149 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 KIF5BP33176 963 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 DNERQ8NFT8 737 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 CTCFLQ8NI51 663 aaPredicted RBP18.75■□□□□ 0.59
TRIM28-213ENST00000598355 USP26Q9BXU7 913 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 AGXT2Q9BYV1 514 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 C11orf49Q9H6J7 331 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 ADD3Q9UEY8 706 aaKnown RBP18.75■□□□□ 0.59
TRIM28-213ENST00000598355 NID2Q14112 1375 aa18.75■□□□□ 0.59
TRIM28-213ENST00000598355 PTPDC1A2A3K4 754 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 DHX16O60231 1041 aaKnown RBP18.74■□□□□ 0.59
TRIM28-213ENST00000598355 ADAMTS4O75173 837 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 RARBP10826 455 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 HSD17B4P51659 736 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 RCAN1P53805 252 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 NKX3-2P78367 333 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 ANO1Q5XXA6 986 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 NUP133Q8WUM0 1156 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 TCEANC2Q96MN5 208 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 PIGSQ96S52 555 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 LZTS2Q9BRK4 669 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms