RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 ZNF467Q7Z7K2 595 aaPredicted RBP16.95■□□□□ 0.3
VRK3-206ENST00000594090 TRPV1Q8NER1 839 aa16.95■□□□□ 0.3
VRK3-206ENST00000594090 CLEC4DQ8WXI8 215 aa16.95■□□□□ 0.3
VRK3-206ENST00000594090 MTMR8Q96EF0 704 aa16.95■□□□□ 0.3
VRK3-206ENST00000594090 TINF2Q9BSI4 451 aa16.95■□□□□ 0.3
VRK3-206ENST00000594090 CRISPLD2Q9H0B8 497 aa16.95■□□□□ 0.3
VRK3-206ENST00000594090 SLC12A7Q9Y666 1083 aa16.95■□□□□ 0.3
VRK3-206ENST00000594090 POTEB2H3BUK9 544 aa16.94■□□□□ 0.3
VRK3-206ENST00000594090 CPA1P15085 419 aa16.94■□□□□ 0.3
VRK3-206ENST00000594090 MLLT1Q03111 559 aaPredicted RBP16.94■□□□□ 0.3
VRK3-206ENST00000594090 BLOC1S2Q6QNY1 142 aa16.94■□□□□ 0.3
VRK3-206ENST00000594090 NSMFQ6X4W1 530 aa16.94■□□□□ 0.3
VRK3-206ENST00000594090 FBXO11Q86XK2 927 aa16.94■□□□□ 0.3
VRK3-206ENST00000594090 MSL3Q8N5Y2 521 aaKnown RBP16.94■□□□□ 0.3
VRK3-206ENST00000594090 FAM133AQ8N9E0 248 aa16.94■□□□□ 0.3
VRK3-206ENST00000594090 CTCFLQ8NI51 663 aaPredicted RBP16.94■□□□□ 0.3
VRK3-206ENST00000594090 RIOX1Q9H6W3 641 aa16.94■□□□□ 0.3
VRK3-206ENST00000594090 CYP39A1Q9NYL5 469 aa16.94■□□□□ 0.3
VRK3-206ENST00000594090 SYNGAP1Q96PV0 1343 aa16.94■□□□□ 0.3
VRK3-206ENST00000594090 CYTH3O43739 400 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 CALM1P0DP23 149 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 CALM2P0DP24 149 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 CALM3P0DP25 149 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 RXRAP19793 462 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 KIF5BP33176 963 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 CNTN2Q02246 1040 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 PRAMEF19Q5SWL8 479 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 MAMDC4Q6UXC1 1216 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 ABCB11O95342 1321 aa16.93■□□□□ 0.3
VRK3-206ENST00000594090 LRRC37A2A6NM11 1700 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 ZBTB5O15062 677 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 CAPN2P17655 700 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 CASTP20810 708 aaKnown RBP16.92■□□□□ 0.3
VRK3-206ENST00000594090 PSMA5P28066 241 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 CNGA1P29973 690 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 BAATQ14032 418 aaPredicted RBP16.92■□□□□ 0.3
VRK3-206ENST00000594090 APOA5Q6Q788 366 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 MICU3Q86XE3 530 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 HOMER1Q86YM7 354 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 RAB11FIP4Q86YS3 637 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 CCDC144CPQ8IYA2 1237 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 SPZ1Q9BXG8 430 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 NRBP1Q9UHY1 535 aa16.92■□□□□ 0.3
VRK3-206ENST00000594090 PTPDC1A2A3K4 754 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 SOWAHBA6NEL2 793 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 PPP1R11O60927 126 aaPredicted RBP16.91■□□□□ 0.3
VRK3-206ENST00000594090 PLEKHA8P1O95397 391 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 TFRCP02786 760 aaKnown RBP16.91■□□□□ 0.3
VRK3-206ENST00000594090 RPS6KB1P23443 525 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 GNAQP50148 359 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 SLC30A10Q6XR72 485 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 SYNE3Q6ZMZ3 975 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 RNF207Q6ZRF8 634 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 PIGSQ96S52 555 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 AMNQ9BXJ7 453 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 DDX20Q9UHI6 824 aaKnown RBP16.91■□□□□ 0.3
VRK3-206ENST00000594090 OGDHLQ9ULD0 1010 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 ASTN1O14525 1302 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 MCM3APO60318 1980 aa16.91■□□□□ 0.3
VRK3-206ENST00000594090 SEPT4O43236 478 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 MSCO60682 206 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 SNAI1O95863 264 aaPredicted RBP16.9■□□□□ 0.3
VRK3-206ENST00000594090 FGD1P98174 961 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 LHX8Q68G74 356 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 Q6ZUG5 572 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 ARMCX2Q7L311 632 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 UBE2Q1Q7Z7E8 422 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 FANCBQ8NB91 859 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 PURBQ96QR8 312 aaKnown RBP16.9■□□□□ 0.3
VRK3-206ENST00000594090 LZTS2Q9BRK4 669 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.9■□□□□ 0.3
VRK3-206ENST00000594090 BRPF3Q9ULD4 1205 aa16.9■□□□□ 0.3
VRK3-206ENST00000594090 MRPL11Q9Y3B7 192 aaKnown RBP16.9■□□□□ 0.3
VRK3-206ENST00000594090 KLF18A0A0U1RQI7 1052 aa16.89■□□□□ 0.29
VRK3-206ENST00000594090 EIF5BO60841 1220 aaKnown RBP16.89■□□□□ 0.29
VRK3-206ENST00000594090 FARP2O94887 1054 aaPredicted RBP16.89■□□□□ 0.29
VRK3-206ENST00000594090 ZNF865P0CJ78 1059 aaPredicted RBP16.89■□□□□ 0.29
VRK3-206ENST00000594090 CALML3P27482 149 aa16.89■□□□□ 0.29
VRK3-206ENST00000594090 SMARCA1P28370 1054 aa16.89■□□□□ 0.29
VRK3-206ENST00000594090 RPS6P62753 249 aaKnown RBP16.89■□□□□ 0.29
VRK3-206ENST00000594090 FBXL16Q8N461 479 aa16.89■□□□□ 0.29
VRK3-206ENST00000594090 SRBD1Q8N5C6 995 aaKnown RBP16.89■□□□□ 0.29
VRK3-206ENST00000594090 ANKLE1Q8NAG6 615 aa16.89■□□□□ 0.29
VRK3-206ENST00000594090 RGS22Q8NE09 1264 aa16.89■□□□□ 0.29
VRK3-206ENST00000594090 ZSWIM6Q9HCJ5 1215 aa16.89■□□□□ 0.29
VRK3-206ENST00000594090 CNPY2Q9Y2B0 182 aa16.89■□□□□ 0.29
VRK3-206ENST00000594090 PNMA6FA0A0J9YX94 578 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 ASB14A6NK59 587 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 ZBTB43O43298 467 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 TMTC3Q6ZXV5 915 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 RUFY3Q7L099 469 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 PIBF1Q8WXW3 757 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 BRF1Q92994 677 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 AGXT2Q9BYV1 514 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 TM6SF1Q9BZW5 370 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 MAF1Q9H063 256 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 ADD3Q9UEY8 706 aaKnown RBP16.88■□□□□ 0.29
VRK3-206ENST00000594090 PCDHA1Q9Y5I3 950 aa16.88■□□□□ 0.29
VRK3-206ENST00000594090 BAZ2BQ9UIF8 2168 aaKnown RBP16.88■□□□□ 0.29
VRK3-206ENST00000594090 GOLGA8AA7E2F4 631 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms