RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 SSH3Q8TE77 659 aa13.22□□□□□ -0.29
ZNF540-209ENST00000590588 MFSD14AQ96MC6 490 aa13.22□□□□□ -0.29
ZNF540-209ENST00000590588 RAVER2Q9HCJ3 691 aaKnown RBP13.22□□□□□ -0.29
ZNF540-209ENST00000590588 TNKSO95271 1327 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 ST18O60284 1047 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 IQCF3P0C7M6 154 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 PDE6AP16499 860 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 SMPD1P17405 629 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 ATP8B2P98198 1209 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 CNTN2Q02246 1040 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 C12orf60Q5U649 245 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 C16orf86Q6ZW13 317 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 LCORLQ8N3X6 602 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 GDPD5Q8WTR4 605 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 NUP88Q99567 741 aaPredicted RBP13.21□□□□□ -0.29
ZNF540-209ENST00000590588 SUGCTQ9HAC7 445 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 SLC38A10Q9HBR0 1119 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 FOXD4L1Q9NU39 408 aa13.21□□□□□ -0.29
ZNF540-209ENST00000590588 NOP58Q9Y2X3 529 aaKnown RBP13.21□□□□□ -0.29
ZNF540-209ENST00000590588 ZNF532Q9HCE3 1301 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 USP17L12C9JPN9 530 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 USP17L21D6R901 530 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 F5H6K3 240 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 PITPNM1O00562 1244 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 KCNJ6P48051 423 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 OAZ1P54368 228 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 FOXK2Q01167 660 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 KLRC3Q07444 240 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 SPRED2Q7Z698 418 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 TRMT2AQ8IZ69 625 aaKnown RBP13.2□□□□□ -0.3
ZNF540-209ENST00000590588 FAM133AQ8N9E0 248 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 KIFC2Q96AC6 838 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 ZBED2Q9BTP6 218 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 POLR3EQ9NVU0 708 aa13.2□□□□□ -0.3
ZNF540-209ENST00000590588 NAV1Q8NEY1 1877 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 IPO8O15397 1037 aaKnown RBP13.19□□□□□ -0.3
ZNF540-209ENST00000590588 BCAR3O75815 825 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 RARSP54136 660 aaKnown RBP13.19□□□□□ -0.3
ZNF540-209ENST00000590588 TAPT1Q6NXT6 567 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 HFE2Q6ZVN8 426 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 DDRGK1Q96HY6 314 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 TGS1Q96RS0 853 aaKnown RBP13.19□□□□□ -0.3
ZNF540-209ENST00000590588 UPF3BQ9BZI7 483 aaKnown RBP13.19□□□□□ -0.3
ZNF540-209ENST00000590588 ARMT1Q9H993 441 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 PDGFCQ9NRA1 345 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 FEM1BQ9UK73 627 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 FAM50BQ9Y247 325 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 USP34Q70CQ2 3546 aa13.19□□□□□ -0.3
ZNF540-209ENST00000590588 CYP2D7A0A087X1C5 515 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 TCRBV5S4A2TA0A5A2 114 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 LCHNA4D1U4 455 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 SOWAHBA6NEL2 793 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 PRKAB2O43741 272 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 NDUFB10O96000 172 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 FDX1P10109 184 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 PTGS1P23219 599 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 ERVK-21P61565 698 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 BFSP2Q13515 415 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 KIAA1211Q6ZU35 1233 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 NEK9Q8TD19 979 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.18□□□□□ -0.3
ZNF540-209ENST00000590588 ACAD9Q9H845 621 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 GPHNQ9NQX3 736 aaPredicted RBP13.18□□□□□ -0.3
ZNF540-209ENST00000590588 HOMER2Q9NSB8 354 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 NYAP2Q9P242 653 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 PRKAG3Q9UGI9 489 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 COG6Q9Y2V7 657 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 MCM3APO60318 1980 aa13.18□□□□□ -0.3
ZNF540-209ENST00000590588 BRWD1Q9NSI6 2320 aa13.17□□□□□ -0.3
ZNF540-209ENST00000590588 PURAQ00577 322 aaKnown RBP13.17□□□□□ -0.3
ZNF540-209ENST00000590588 LRRFIP1Q32MZ4 808 aaKnown RBP13.17□□□□□ -0.3
ZNF540-209ENST00000590588 FAM47CQ5HY64 1035 aa13.17□□□□□ -0.3
ZNF540-209ENST00000590588 EEPD1Q7L9B9 569 aa13.17□□□□□ -0.3
ZNF540-209ENST00000590588 PHOX2BQ99453 314 aa13.17□□□□□ -0.3
ZNF540-209ENST00000590588 RAD9AQ99638 391 aa13.17□□□□□ -0.3
ZNF540-209ENST00000590588 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.17□□□□□ -0.3
ZNF540-209ENST00000590588 CTNNA3Q9UI47 895 aa13.17□□□□□ -0.3
ZNF540-209ENST00000590588 MTUS1Q9ULD2 1270 aa13.17□□□□□ -0.3
ZNF540-209ENST00000590588 MYL3P08590 195 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 TRIM27P14373 513 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 CPT1AP50416 773 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 PTPN5P54829 565 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 WDR5P61964 334 aaKnown RBP13.16□□□□□ -0.3
ZNF540-209ENST00000590588 NBPF20Q3BBV1 942 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 DUSP28Q4G0W2 176 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 TMEM63BQ5T3F8 832 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 NFRKBQ6P4R8 1299 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 AACSQ86V21 672 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 MTG1Q9BT17 334 aaPredicted RBP13.16□□□□□ -0.3
ZNF540-209ENST00000590588 VTA1Q9NP79 307 aa13.16□□□□□ -0.3
ZNF540-209ENST00000590588 A1CFQ9NQ94 594 aaKnown RBP13.16□□□□□ -0.3
ZNF540-209ENST00000590588 MYH8P13535 1937 aa13.15□□□□□ -0.3
ZNF540-209ENST00000590588 C19orf67A6NJJ6 358 aa13.15□□□□□ -0.3
ZNF540-209ENST00000590588 GJB5O95377 273 aa13.15□□□□□ -0.3
ZNF540-209ENST00000590588 ZP2Q05996 745 aa13.15□□□□□ -0.3
ZNF540-209ENST00000590588 PTPN11Q06124 597 aaPredicted RBP13.15□□□□□ -0.3
ZNF540-209ENST00000590588 TKFCQ3LXA3 575 aa13.15□□□□□ -0.3
ZNF540-209ENST00000590588 BRDTQ58F21 947 aaPredicted RBP13.15□□□□□ -0.3
ZNF540-209ENST00000590588 FBXO16Q8IX29 292 aaPredicted RBP13.15□□□□□ -0.3
ZNF540-209ENST00000590588 CRBNQ96SW2 442 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms