RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 ZNF215Q9UL58 517 aaPredicted RBP8.36□□□□□ -1.07
ZNF540-206ENST00000589117 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.36□□□□□ -1.07
ZNF540-206ENST00000589117 A0A1B0GTH6 734 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 KLRK1P26718 216 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 ST5P78524 1137 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 FMR1Q06787 632 aaKnown RBP eCLIP8.35□□□□□ -1.07
ZNF540-206ENST00000589117 DPYDQ12882 1025 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 NR1H3Q13133 447 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 TBX2Q13207 712 aaPredicted RBP8.35□□□□□ -1.07
ZNF540-206ENST00000589117 KLHL10Q6JEL2 608 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 USP49Q70CQ1 688 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 SMAP1Q8IYB5 467 aaPredicted RBP8.35□□□□□ -1.07
ZNF540-206ENST00000589117 GRAMD1CQ8IYS0 662 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 MNS1Q8NEH6 495 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 ZNF397Q8NF99 534 aaPredicted RBP8.35□□□□□ -1.07
ZNF540-206ENST00000589117 ARGLU1Q9NWB6 273 aaPredicted RBP8.35□□□□□ -1.07
ZNF540-206ENST00000589117 DNAI1Q9UI46 699 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 ECM29Q5VYK3 1845 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 NMT2O60551 498 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 ATP2B4P23634 1241 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 GNA11P29992 359 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 UBA7P41226 1012 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 STAT6P42226 847 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 KCNH2Q12809 1159 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 GRM4Q14833 912 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 ZNF827Q17R98 1081 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 CNGA4Q8IV77 575 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 TBC1D22AQ8WUA7 517 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 CCDC51Q96ER9 411 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 RBM17Q96I25 401 aaKnown RBP8.35□□□□□ -1.07
ZNF540-206ENST00000589117 RWDD2AQ9UIY3 292 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 USP21Q9UK80 565 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 STX8Q9UNK0 236 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 PPP2R2CQ9Y2T4 447 aa8.35□□□□□ -1.07
ZNF540-206ENST00000589117 SCN7AQ01118 1682 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 MYH6P13533 1939 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L15C9J2P7 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L10C9JJH3 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L13C9JLJ4 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 TMEM232C9JQI7 657 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L11C9JVI0 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L18D6R9N7 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L22D6RA61 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L17D6RBQ6 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L19D6RCP7 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L20D6RJB6 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 BBOX1O75936 387 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 CCDC175P0C221 793 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 CYP2D6P10635 497 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 SMARCA1P28370 1054 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 CASQ1P31415 396 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L24Q0WX57 530 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 TRIM14Q14142 442 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 NPY5RQ15761 445 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 HSP90AA4PQ58FG1 418 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 EARS2Q5JPH6 523 aaKnown RBP8.34□□□□□ -1.07
ZNF540-206ENST00000589117 RCSD1Q6JBY9 416 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 TRMT44Q8IYL2 757 aaKnown RBP8.34□□□□□ -1.07
ZNF540-206ENST00000589117 DAGLBQ8NCG7 672 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 UBXN4Q92575 508 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 CUEDC2Q9H467 287 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 MAGEF1Q9HAY2 307 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 SAMSN1Q9NSI8 373 aaKnown RBP8.34□□□□□ -1.07
ZNF540-206ENST00000589117 MAP10Q9P2G4 905 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 SEC63Q9UGP8 760 aaKnown RBP8.34□□□□□ -1.07
ZNF540-206ENST00000589117 MKRN1Q9UHC7 482 aaKnown RBP8.34□□□□□ -1.07
ZNF540-206ENST00000589117 ROBO3Q96MS0 1386 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 MYH2Q9UKX2 1941 aa8.34□□□□□ -1.07
ZNF540-206ENST00000589117 FAM205CA6NFA0 338 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 H7C1D1 291 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 SMIM22K7EJ46 135 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 RNF40O75150 1001 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 PRPHP41219 470 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 PPP1R2P41236 205 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 TUBB4BP68371 445 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 PAK1Q13153 545 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 SOGA3Q5TF21 947 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 ZNF658Q5TYW1 1059 aaPredicted RBP8.34□□□□□ -1.08
ZNF540-206ENST00000589117 RRAGBQ5VZM2 374 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 WWC2Q6AWC2 1192 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 SAMD7Q7Z3H4 446 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 TXNRD3Q86VQ6 643 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 IGSF22Q8N9C0 903 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 SH3RF3Q8TEJ3 882 aaPredicted RBP8.34□□□□□ -1.08
ZNF540-206ENST00000589117 TGFBRAP1Q8WUH2 860 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 AK8Q96MA6 479 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 C6orf50Q9HD87 102 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 BARHL2Q9NY43 387 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 GGA1Q9UJY5 639 aa8.34□□□□□ -1.08
ZNF540-206ENST00000589117 CCDC88AQ3V6T2 1871 aa8.33□□□□□ -1.08
ZNF540-206ENST00000589117 LTBP4Q8N2S1 1624 aa8.33□□□□□ -1.08
ZNF540-206ENST00000589117 LRRC10BA6NIK2 292 aa8.33□□□□□ -1.08
ZNF540-206ENST00000589117 URI1O94763 535 aaPredicted RBP8.33□□□□□ -1.08
ZNF540-206ENST00000589117 ZNF16P17020 682 aaPredicted RBP8.33□□□□□ -1.08
ZNF540-206ENST00000589117 ADKP55263 362 aaKnown RBP8.33□□□□□ -1.08
ZNF540-206ENST00000589117 AMPD3Q01432 767 aa8.33□□□□□ -1.08
ZNF540-206ENST00000589117 ORC2Q13416 577 aaPredicted RBP8.33□□□□□ -1.08
ZNF540-206ENST00000589117 CUL4BQ13620 913 aa8.33□□□□□ -1.08
ZNF540-206ENST00000589117 NCOA4Q13772 614 aa8.33□□□□□ -1.08
ZNF540-206ENST00000589117 TUBB2AQ13885 445 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms