RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PABPC5Q96DU9 382 aaKnown RBP4.96□□□□□ -1.62
LIG3-211ENST00000588713 SCLYQ96I15 445 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 RIPOR3Q96MK2 946 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 SLC9A7Q96T83 725 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 ANGPTL2Q9UKU9 493 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 ZKSCAN5Q9Y2L8 839 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 PCDHGC5Q9Y5F6 944 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 PTPRFP10586 1907 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 GCN1Q92616 2671 aaKnown RBP4.95□□□□□ -1.62
LIG3-211ENST00000588713 RNF223E7ERA6 249 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 BAG4O95429 457 aaKnown RBP4.95□□□□□ -1.62
LIG3-211ENST00000588713 MBD3O95983 291 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 CYP2E1P05181 493 aaPredicted RBP4.95□□□□□ -1.62
LIG3-211ENST00000588713 TRIM27P14373 513 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 NCLP19338 710 aaKnown RBP4.95□□□□□ -1.62
LIG3-211ENST00000588713 SDHBP21912 280 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 CCNA1P78396 465 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 RING1Q06587 406 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 RABEP1Q15276 862 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 ALDH1L2Q3SY69 923 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 TCEAL5Q5H9L2 206 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 TMCO2Q7Z6W1 182 aaPredicted RBP4.95□□□□□ -1.62
LIG3-211ENST00000588713 ZBTB33Q86T24 672 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 RPAINQ86UA6 219 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 HERC6Q8IVU3 1022 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 ZFPM1Q8IX07 1006 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 FAM126BQ8IXS8 530 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 CRIPAKQ8N1N5 446 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 ZNF280CQ8ND82 737 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 TTLL11Q8NHH1 800 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 RUBCNQ92622 972 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 GLT1D1Q96MS3 346 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 ZDHHC15Q96MV8 337 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 MYD88Q99836 296 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 HAUS7Q99871 368 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 SMC4Q9NTJ3 1288 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 CHPF2Q9P2E5 772 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 IQSEC3Q9UPP2 1182 aaPredicted RBP4.95□□□□□ -1.62
LIG3-211ENST00000588713 R4GN57 208 aa4.95□□□□□ -1.62
LIG3-211ENST00000588713 SPEGQ15772 3267 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 ZFYVE26Q68DK2 2539 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 EP300Q09472 2414 aaPredicted RBP4.94□□□□□ -1.62
LIG3-211ENST00000588713 ARVCFO00192 962 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 CTNND1O60716 968 aaKnown RBP4.94□□□□□ -1.62
LIG3-211ENST00000588713 CDC45O75419 566 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 PCCAP05165 728 aaPredicted RBP4.94□□□□□ -1.62
LIG3-211ENST00000588713 PROS1P07225 676 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 HOXC6P09630 235 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 ACTN1P12814 892 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 GTF2F1P35269 517 aaKnown RBP eCLIP4.94□□□□□ -1.62
LIG3-211ENST00000588713 GYG1P46976 350 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 DLX2Q07687 328 aaPredicted RBP4.94□□□□□ -1.62
LIG3-211ENST00000588713 DMTNQ08495 405 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 PTGDRQ13258 359 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 SMAD4Q13485 552 aaKnown RBP4.94□□□□□ -1.62
LIG3-211ENST00000588713 MTMR2Q13614 643 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 GRB14Q14449 540 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 ANGPT1Q15389 498 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 KCNA10Q16322 511 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 ZSCAN23Q3MJ62 389 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 KMT5BQ4FZB7 885 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 TIGD5Q53EQ6 642 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 ATF7IPQ6VMQ6 1270 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 BANK1Q8NDB2 785 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 PRIMPOLQ96LW4 560 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 KIF2CQ99661 725 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 RTKNQ9BST9 563 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 CCDC94Q9BW85 323 aaPredicted RBP4.94□□□□□ -1.62
LIG3-211ENST00000588713 WNT8AQ9H1J5 351 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 TMOD4Q9NZQ9 345 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 TSPYL4Q9UJ04 414 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 TNNQ9UQP3 1299 aa4.94□□□□□ -1.62
LIG3-211ENST00000588713 DDX49Q9Y6V7 483 aaKnown RBP4.94□□□□□ -1.62
LIG3-211ENST00000588713 LOC285556D6RIA3 1793 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 A0A0U1RQG5 324 aaPredicted RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 MYADML2A6NDP7 307 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 MOXD2PA6NHM9 499 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 FAM196BA6NMK8 535 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 C1QTNF9BB2RNN3 333 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 IPO8O15397 1037 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 HTATSF1O43719 755 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 KRT38O76015 456 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 CSPG5O95196 566 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 C1QTNF9P0C862 333 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 ITGA6P23229 1130 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 ADORA2AP29274 412 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 LTBRP36941 435 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 CDK7P50613 346 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 HMGN5P82970 282 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 HDLBPQ00341 1268 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 PTPROQ16827 1216 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 PKDCCQ504Y2 493 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 OLFML2BQ68BL8 750 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 CDC42EP5Q6NZY7 148 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 C15orf52Q6ZUT6 534 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 CHD1LQ86WJ1 897 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 NAV2Q8IVL1 2488 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 ITPRIPQ8IWB1 547 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 MYRIPQ8NFW9 859 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 PHOSPHO2Q8TCD6 241 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms