RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SYDE2Q5VT97 1194 aa16.06■□□□□ 0.16
LIG3-205ENST00000585941 DRC7Q8IY82 874 aa16.06■□□□□ 0.16
LIG3-205ENST00000585941 AMNQ9BXJ7 453 aa16.06■□□□□ 0.16
LIG3-205ENST00000585941 MAGEF1Q9HAY2 307 aa16.06■□□□□ 0.16
LIG3-205ENST00000585941 GINM1Q9NU53 330 aa16.06■□□□□ 0.16
LIG3-205ENST00000585941 PRR29P0C7W0 189 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 DPYDQ12882 1025 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 RRP1BQ14684 758 aaKnown RBP16.05■□□□□ 0.16
LIG3-205ENST00000585941 NCAPHQ15003 741 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 PPP4R3AQ6IN85 833 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 PDXDC2PQ6P474 469 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 RAB34Q9BZG1 259 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 DISC1Q9NRI5 854 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 PCDHA1Q9Y5I3 950 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 GTPBP6O43824 516 aaPredicted RBP16.05■□□□□ 0.16
LIG3-205ENST00000585941 ASNSP08243 561 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 ERCC5P28715 1186 aaPredicted RBP16.05■□□□□ 0.16
LIG3-205ENST00000585941 CAP2P40123 477 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 STAT6P42226 847 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 JAG1P78504 1218 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 IKQ13123 557 aaPredicted RBP16.05■□□□□ 0.16
LIG3-205ENST00000585941 AP3B2Q13367 1082 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 DHX8Q14562 1220 aaKnown RBP16.05■□□□□ 0.16
LIG3-205ENST00000585941 ISM2Q6H9L7 571 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 FBXO11Q86XK2 927 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 TMEM39BQ9GZU3 492 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 RMND1Q9NWS8 449 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 TMEM260Q9NX78 707 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.05■□□□□ 0.16
LIG3-205ENST00000585941 PGAP2Q9UHJ9 254 aa16.05■□□□□ 0.16
LIG3-205ENST00000585941 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.05■□□□□ 0.16
LIG3-205ENST00000585941 A0A1W2PRG0 241 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 TMEM232C9JQI7 657 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 FZD9O00144 591 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 PLA2G6O60733 806 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 PTGER2P43116 358 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 AFMP43652 599 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 TMEM266Q2M3C6 531 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 NBPF9Q3BBW0 867 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 RRAGBQ5VZM2 374 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 SPC24Q8NBT2 197 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 RASSF8Q8NHQ8 419 aa16.04■□□□□ 0.16
LIG3-205ENST00000585941 RTN4Q9NQC3 1192 aaKnown RBP16.04■□□□□ 0.16
LIG3-205ENST00000585941 MYH7BA7E2Y1 1941 aa16.03■□□□□ 0.16
LIG3-205ENST00000585941 FOSP01100 380 aaPredicted RBP16.03■□□□□ 0.16
LIG3-205ENST00000585941 FXR2P51116 673 aaKnown RBP eCLIP16.03■□□□□ 0.162e-6■□□□□ 9.9
LIG3-205ENST00000585941 STAT2P52630 851 aa16.03■□□□□ 0.16
LIG3-205ENST00000585941 CALCRLQ16602 461 aa16.03■□□□□ 0.16
LIG3-205ENST00000585941 GRAMD1CQ8IYS0 662 aa16.03■□□□□ 0.16
LIG3-205ENST00000585941 ENOX1Q8TC92 643 aaKnown RBP16.03■□□□□ 0.16
LIG3-205ENST00000585941 CHURC1Q8WUH1 139 aa16.03■□□□□ 0.16
LIG3-205ENST00000585941 MTMR9Q96QG7 549 aa16.03■□□□□ 0.16
LIG3-205ENST00000585941 CBFA2T2O43439 604 aa16.02■□□□□ 0.16
LIG3-205ENST00000585941 BMP6P22004 513 aa16.02■□□□□ 0.16
LIG3-205ENST00000585941 USP11P51784 963 aa16.02■□□□□ 0.16
LIG3-205ENST00000585941 PDIA5Q14554 519 aa16.02■□□□□ 0.16
LIG3-205ENST00000585941 RASA3Q14644 834 aa16.02■□□□□ 0.16
LIG3-205ENST00000585941 MOXD1Q6UVY6 613 aa16.02■□□□□ 0.16
LIG3-205ENST00000585941 IGSF22Q8N9C0 903 aa16.02■□□□□ 0.16
LIG3-205ENST00000585941 GTPBP4Q9BZE4 634 aaKnown RBP16.02■□□□□ 0.16
LIG3-205ENST00000585941 VCPKMTQ9H867 229 aa16.02■□□□□ 0.16
LIG3-205ENST00000585941 ATAD5Q96QE3 1844 aa16.02■□□□□ 0.15
LIG3-205ENST00000585941 GMPSP49915 693 aaPredicted RBP16.02■□□□□ 0.15
LIG3-205ENST00000585941 KARSQ15046 597 aaKnown RBP16.02■□□□□ 0.15
LIG3-205ENST00000585941 UBE2SQ16763 222 aa16.02■□□□□ 0.15
LIG3-205ENST00000585941 CABP7Q86V35 215 aa16.02■□□□□ 0.15
LIG3-205ENST00000585941 FAM160B2Q86V87 743 aa16.02■□□□□ 0.15
LIG3-205ENST00000585941 NUP88Q99567 741 aaPredicted RBP16.02■□□□□ 0.15
LIG3-205ENST00000585941 IMPACTQ9P2X3 320 aa16.02■□□□□ 0.15
LIG3-205ENST00000585941 POTEDQ86YR6 584 aa16.01■□□□□ 0.15
LIG3-205ENST00000585941 MICALL2Q8IY33 904 aa16.01■□□□□ 0.15
LIG3-205ENST00000585941 HOOK2Q96ED9 719 aa16.01■□□□□ 0.15
LIG3-205ENST00000585941 CALML4Q96GE6 196 aa16.01■□□□□ 0.15
LIG3-205ENST00000585941 PRR12Q9ULL5 1215 aa16.01■□□□□ 0.15
LIG3-205ENST00000585941 SLC26A4O43511 780 aa16■□□□□ 0.15
LIG3-205ENST00000585941 LMOD1P29536 600 aaPredicted RBP16■□□□□ 0.15
LIG3-205ENST00000585941 ECE1P42892 770 aa16■□□□□ 0.15
LIG3-205ENST00000585941 GSDMDP57764 484 aa16■□□□□ 0.15
LIG3-205ENST00000585941 MIGA2Q7L4E1 593 aa16■□□□□ 0.15
LIG3-205ENST00000585941 ACER1Q8TDN7 264 aa16■□□□□ 0.15
LIG3-205ENST00000585941 UPF1Q92900 1129 aaKnown RBP eCLIP16■□□□□ 0.15
LIG3-205ENST00000585941 KBTBD4Q9NVX7 518 aa16■□□□□ 0.15
LIG3-205ENST00000585941 DDX25Q9UHL0 483 aaKnown RBP16■□□□□ 0.15
LIG3-205ENST00000585941 CNOT7Q9UIV1 285 aaKnown RBP16■□□□□ 0.15
LIG3-205ENST00000585941 DICER1Q9UPY3 1922 aaKnown RBP16■□□□□ 0.15
LIG3-205ENST00000585941 CYP3A7-CYP3A51PA0A087WV96 503 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 TDP2O95551 362 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 CYP3A7P24462 503 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 TECP42680 631 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 TXKP42681 527 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 FANCCQ00597 558 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 AMPD3Q01432 767 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 RASSF7Q02833 373 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 CCDC186Q7Z3E2 898 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 CCDC47Q96A33 483 aaKnown RBP15.99■□□□□ 0.15
LIG3-205ENST00000585941 TEPSINQ96N21 525 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 ANO3Q9BYT9 981 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 TTC12Q9H892 705 aaPredicted RBP15.99■□□□□ 0.15
LIG3-205ENST00000585941 STK17AQ9UEE5 414 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 LRWD1Q9UFC0 647 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms